RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1233465" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26485540 26485540 PRJNA1233465a_S_NODE_204368_length_172_cov_0.918699_g203094_i0 PRJNA1233465 204368 172 0.918699 1.58016228 Acrasis kona 1008807 Heterolobosea other_Eukaryota 103 2.65e-26   NR KAL0479838.1 1008807 g203094 i0 87.5 0.976744186046512 56 7 97.7 0 170 3 72 127 KAL0479838.1 ribosomal protein S18 [Acrasis kona] diamond 168 103 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
33077271 33077271 PRJNA1233465b_S_NODE_91501_length_284_cov_3.204255_g89816_i0 PRJNA1233465 91501 284 3.204255 9.1000842 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 0.00146   NR XP_044569136.1 5763 g89816 i0 40.9 3.13732394366197 66 30 60.2 2 37 207 659 724 XP_044569136.1 uncharacterized protein FDP41_000322 [Naegleria fowleri] diamond 891 47.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;