RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1233465" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33000001 33000001 PRJNA1233465a_S_NODE_222635_length_166_cov_1.307692_g221361_i0 PRJNA1233465 222635 166 1.307692 2.17076872 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 71.6 8.55e-13   NR XP_011129292.1 110365 g221361 i0 60 1.66265060240964 45 18 81.3 0 160 26 613 657 XP_011129292.1 chitinase [Gregarina niphandrodes] diamond 276 71.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
33104470 33104470 PRJNA1233465e_S_NODE_99982_length_193_cov_1.020833_g98672_i0 PRJNA1233465 99982 193 1.020833 1.97020769 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0276   NR XP_012762140.2 5854 g98672 i0 39.1 0.994818652849741 64 29 83.9 2 178 17 3907 3970 XP_012762140.2 putative membrane protein, partial [Plasmodium reichenowi] diamond 192 42.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;