RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1233317" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1233317 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16349638 16349638 PRJNA1233317_S_NODE_3273_length_353_cov_8.370748_g3237_i0 PRJNA1233317 3273 353 8.370748 29.54874044 Eukaryota 2759 Plants Plants 100 5.639999999999999e-24   NR AFK43985.1 34305 g3237 i0 52.9 1.48725212464589 87 41 73.9 0 349 89 87 173 AFK43985.1 unknown [Lotus japonicus] diamond 525 101 0.99009900990099 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
27578274 27578274 PRJNA1233317_S_NODE_12364_length_220_cov_5.304348_g12328_i0 PRJNA1233317 12364 220 5.304348 11.6695656 Corylus avellana 13451 Plants Plants 43.1 0.0194   NR XP_059455071.1 13451 g12328 i0 45.7 0.627272727272727 46 25 62.7 0 14 151 38 83 XP_059455071.1 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 [Corylus avellana] diamond 138 43.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Corylus Corylus avellana
29346520 29346520 PRJNA1233317_S_NODE_15929_length_192_cov_3.894737_g15893_i0 PRJNA1233317 15929 192 3.894737 7.47789504 Gossypium hirsutum 3635 Plants Plants 41.2 0.0267   NR XP_040962453.1 3635 g15893 i0 42.9 0.65625 42 19 57.8 1 156 46 68 109 XP_040962453.1 uncharacterized protein [Gossypium hirsutum] diamond 126 41.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;