RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1233317" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1233317 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22012394 22012394 PRJNA1233317_S_NODE_7258_length_283_cov_3.241071_g7222_i0 PRJNA1233317 7258 283 3.241071 9.17223093 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 91.3 6.45e-22   NR XP_004339811.1 1257118 g7222 i0 79.6 0.57243816254417 54 9 55.1 1 283 128 20 73 XP_004339811.1 ribonucleotide reductase [Acanthamoeba castellanii str. Neff] diamond 162 91.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29819816 29819816 PRJNA1233317_S_NODE_4951_length_319_cov_7.511538_g4915_i0 PRJNA1233317 4951 319 7.511538 23.96180622 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.5 2.32e-12   NR XP_004341175.1 1257118 g4915 i0 46.3 0.630094043887147 67 36 63 0 3 203 122 188 XP_004341175.1 uncharacterized protein ACA1_323420 [Acanthamoeba castellanii str. Neff] diamond 201 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30230715 30230715 PRJNA1233317_S_NODE_6692_length_291_cov_2.633621_g6656_i0 PRJNA1233317 6692 291 2.633621 7.66383711 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 4.15e-27   NR XP_004333197.1 1257118 g6656 i0 59.8 1 97 37 99 2 2 289 205 300 XP_004333197.1 oxidoreductase, short chain dehydrogenase/reductase superfamily protein [Acanthamoeba castellanii str. Neff] diamond 291 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32728005 32728005 PRJNA1233317_S_NODE_6100_length_300_cov_3.639004_g6064_i0 PRJNA1233317 6100 300 3.639004 10.917012 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72.4 2.1e-12   NR XP_004334335.1 1257118 g6064 i0 66.1 0.59 59 15 59 2 12 188 306 359 XP_004334335.1 actin related protein 2/3 complex, 41 kDa subunit [Acanthamoeba castellanii str. Neff] diamond 177 72.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;