RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1233317" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1233317 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30767906 30767906 PRJNA1233317_S_NODE_3734_length_343_cov_3.577465_g3698_i0 PRJNA1233317 3734 343 3.577465 12.27070495 Cryptococcus neoformans var. grubii c45 5207 Fungi Fungi 43.9 0.0434   NR OWZ39700.1 1230068 g3698 i0 29.9 0.760932944606414 87 52 68.2 2 12 245 262 348 OWZ39700.1 hypothetical protein C356_03960 [Cryptococcus neoformans var. grubii c45] diamond 261 43.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
31368585 31368585 PRJNA1233317_S_NODE_16196_length_190_cov_3.702290_g16160_i0 PRJNA1233317 16196 190 3.70229 7.034351 Malassezia arunalokei 1514897 Fungi Fungi 62.4 2.21e-9   NR WFD16437.1 1514897 g16160 i0 61.3 0.978947368421053 62 12 78.9 1 190 41 938 999 WFD16437.1 hypothetical protein MARU1_002474 [Malassezia arunalokei] diamond 186 62.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia arunalokei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;