RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1233317" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA1233317 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4162694 4162694 PRJNA1233317_S_NODE_5584_length_308_cov_4.546185_g5548_i0 PRJNA1233317 5584 308 4.546185 14.0022498 Chrysophaeum taylorii 2483200 SAR_Eukaryotes SAR_Eukaryotes 112 1.25e-26   NR KAJ8603067.1 2483200 g5548 i0 85 1.75324675324675 60 9 58.4 0 5 184 378 437 KAJ8603067.1 hypothetical protein CTAYLR_006662 [Chrysophaeum taylorii] diamond 540 112 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Chrysophaeum Chrysophaeum taylorii
32475796 32475796 PRJNA1233317_S_NODE_11239_length_232_cov_2.115607_g11203_i0 PRJNA1233317 11239 232 2.115607 4.9082082400000004 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 45.4 7.88e-4   NR DAZ99657.1 4803 g11203 i0 52.3 0.568965517241379 44 21 56.9 0 98 229 47 90 DAZ99657.1 TPA: hypothetical protein N0F65_001894 [Lagenidium giganteum] diamond 132 45.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32822393 32822393 PRJNA1233317_S_NODE_2720_length_369_cov_4.761290_g2684_i0 PRJNA1233317 2720 369 4.76129 17.5691601 Tribonema minus 303371 SAR_Eukaryotes SAR_Eukaryotes 78.2 5.09e-14   NR KAG5182764.1 303371 g2684 i0 46.6 6.1869918699187 73 39 59.3 0 369 151 320 392 KAG5182764.1 hypothetical protein JKP88DRAFT_348746 [Tribonema minus] diamond 2283 78.2 1 Eukaryota Sar     Xanthophyceae Tribonematales Tribonemataceae Tribonema Tribonema minus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;