RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1228616" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1228616 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27641658 27641658 PRJNA1228616_S_NODE_3504_length_215_cov_1.244186_g3481_i0 PRJNA1228616 3504 215 1.244186 2.6749999 Lynx pardinus 191816 Chordata Chordata 46.6 3.82e-4   NR VFV35591.1 191816 g3481 i0 48.9 1.29767441860465 47 20 60 1 137 9 30 76 VFV35591.1 ribosomal protein l17 [Lynx pardinus] diamond 279 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Lynx Lynx pardinus
29409489 29409489 PRJNA1228616_S_NODE_1069_length_328_cov_3.424561_g1046_i0 PRJNA1228616 1069 328 3.424561 11.23256008 Oxyura jamaicensis 8884 Chordata Chordata 46.6 0.00359   NR XP_035182290.1 8884 g1046 i0 50.6 0.740853658536585 81 39 73.2 1 81 320 8 88 XP_035182290.1 homeobox protein EMX1, partial [Oxyura jamaicensis] diamond 243 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Oxyura Oxyura jamaicensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;