RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1227535" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28007656 28007656 PRJNA1227535_P_NODE_26345_length_247_cov_1.557471_g26221_i0 PRJNA1227535 26345 247 1.557471 3.84695337 Pseudomonadati 3379134 Bacteria Bacteria 77 2.83e-14   NR MBI3606558.1 2026887 g26221 i0 45.1 3.87449392712551 82 45 99.6 0 247 2 44 125 MBI3606558.1 nucleotidyltransferase family protein [Nitrospirota bacterium] diamond 957 77 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32064176 32064176 PRJNA1227535_P_NODE_29758_length_243_cov_0.917647_g29634_i0 PRJNA1227535 29758 243 0.917647 2.22988221 Nitrospira lenta 1436998 Bacteria Bacteria 139 1.22e-40   NR WP_121989589.1 1436998 g29634 i0 97.1 0.864197530864197 70 2 86.4 0 34 243 1 70 WP_121989589.1 type II toxin-antitoxin system VapC family toxin [Nitrospira lenta] diamond 210 139 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira lenta
32095860 32095860 PRJNA1227535_P_NODE_26558_length_247_cov_0.896552_g26434_i0 PRJNA1227535 26558 247 0.896552 2.21448344 Nitrospira sp. ST-bin5 1978765 Bacteria Bacteria 92.4 6.67e-22   NR OQW65365.1 1978765 g26434 i0 100 0.522267206477733 43 0 52.2 0 3 131 89 131 OQW65365.1 MAG: hypothetical protein BVN29_10155 [Nitrospira sp. ST-bin5] diamond 129 92.4 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. ST-bin5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;