RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1227535" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27452203 27452203 PRJNA1227535_P_NODE_24383_length_250_cov_0.881356_g24259_i0 PRJNA1227535 24383 250 0.881356 2.20339 Minisyncoccota bacterium 2053589 Bacteria Bacteria 127 3.68e-32   NR MFM7089071.1 2053589 g24259 i0 69.1 0.972 81 25 97.2 0 1 243 193 273 MFM7089071.1 GspE/PulE family protein [Candidatus Paceibacterota bacterium] diamond 243 127 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28114912 28114912 PRJNA1227535_P_NODE_11285_length_288_cov_1.409302_g11162_i0 PRJNA1227535 11285 288 1.409302 4.05878976 Minisyncoccota bacterium 2053589 Bacteria Bacteria 185 4.3299999999999996e-52   NR MEX0918218.1 2053589 g11162 i0 95.8 9 96 4 100 0 1 288 403 498 MEX0918218.1 excinuclease ABC subunit UvrA [Candidatus Paceibacterota bacterium] diamond 2592 185 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29030902 29030902 PRJNA1227535_P_NODE_18788_length_262_cov_2.465608_g18664_i0 PRJNA1227535 18788 262 2.465608 6.45989296 Minisyncoccota bacterium 2053589 Bacteria Bacteria 110 1.0400000000000002e-27   NR HEX8591360.1 2053589 g18664 i0 68.2 0.973282442748092 85 27 97.3 0 3 257 35 119 HEX8591360.1 CorA family divalent cation transporter [Candidatus Paceibacterota bacterium] diamond 255 110 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;