RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1227535" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1227535 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27799484 27799484 PRJNA1227535_P_NODE_33004_length_228_cov_2.612903_g32880_i0 PRJNA1227535 33004 228 2.612903 5.95741884 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 114 6.66e-29   NR MDZ7625277.1 2651163 g32880 i0 68 8.88157894736842 75 24 98.7 0 4 228 181 255 MDZ7625277.1 GDP-L-fucose synthase [Ignavibacteriaceae bacterium] diamond 2025 114 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
29220257 29220257 PRJNA1227535_P_NODE_16549_length_270_cov_1.416244_g16426_i0 PRJNA1227535 16549 270 1.416244 3.8238588 Ignavibacteria bacterium 2053306 Bacteria Bacteria 66.6 1.43e-10   NR MBD1210882.1 2053306 g16426 i0 65.3 0.544444444444444 49 17 54.4 0 270 124 242 290 MBD1210882.1 DUF692 domain-containing protein [Ignavibacteria bacterium] diamond 147 66.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31146587 31146587 PRJNA1227535_P_NODE_22675_length_252_cov_0.871508_g22551_i0 PRJNA1227535 22675 252 0.871508 2.19620016 Ignavibacteria bacterium 2053306 Bacteria Bacteria 80.1 1.45e-16   NR MBK6877673.1 2053306 g22551 i0 40.2 0.976190476190476 82 49 97.6 0 246 1 90 171 MBK6877673.1 RsmD family RNA methyltransferase [Ignavibacteria bacterium] diamond 246 80.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
32431175 32431175 PRJNA1227535_P_NODE_11759_length_286_cov_2.014085_g11636_i0 PRJNA1227535 11759 286 2.014085 5.7602831 Pseudomonadati 3379134 Bacteria Bacteria 132 5.87e-35   NR WP_014857015.1 1134405 g11636 i0 55.3 8.30769230769231 132 22 99.7 1 286 2 38 169 WP_014857015.1 redox-regulated ATPase YchF [Melioribacter roseus] diamond 2376 132 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Melioribacter Melioribacter roseus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;