RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1227535" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1227535 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22723801 22723801 PRJNA1227535_P_NODE_13838_length_279_cov_1.514563_g13715_i0 PRJNA1227535 13838 279 1.514563 4.22563077 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 84 1.67e-16   NR KAI4555695.1 2918886 g13715 i0 83 0.505376344086022 47 7 49.5 1 139 2 101 147 KAI4555695.1 hypothetical protein MJG53_021209, partial [Ovis ammon polii x Ovis aries] diamond 141 84 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
27135542 27135542 PRJNA1227535_P_NODE_16302_length_271_cov_1.116162_g16179_i0 PRJNA1227535 16302 271 1.116162 3.02479902 Engystomops pustulosus 76066 Chordata Chordata 43.9 0.00229   NR KAG8588135.1 76066 g16179 i0 58.8 0.376383763837638 34 13 37.6 1 5 106 37 69 KAG8588135.1 hypothetical protein GDO81_005883 [Engystomops pustulosus] diamond 102 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28114916 28114916 PRJNA1227535_P_NODE_17925_length_265_cov_1.932292_g17802_i0 PRJNA1227535 17925 265 1.932292 5.1205738 Meleagris gallopavo 9103 Chordata Chordata 52.8 1.45e-5   NR XP_010726601.1 9103 g17802 i0 62.5 0.452830188679245 40 15 45.3 0 145 264 1 40 XP_010726601.1 NACHT, LRR and PYD domains-containing protein 1b allele 2 isoform X1 [Meleagris gallopavo] diamond 120 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
28494019 28494019 PRJNA1227535_P_NODE_18267_length_264_cov_1.633508_g18143_i0 PRJNA1227535 18267 264 1.633508 4.31246112 Pteropus alecto 9402 Chordata Chordata 42.7 0.00969   NR ELK02249.1 9402 g18143 i0 51.2 0.488636363636364 43 21 48.9 0 23 151 6 48 ELK02249.1 hypothetical protein PAL_GLEAN10005158 [Pteropus alecto] diamond 129 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
28494024 28494024 PRJNA1227535_P_NODE_23907_length_250_cov_1.762712_g23783_i0 PRJNA1227535 23907 250 1.762712 4.40678 Crocuta crocuta 9678 Chordata Chordata 47.8 2.01e-4   NR KAF0883740.1 9678 g23783 i0 46.5 1.656 43 23 51.6 0 164 36 5 47 KAF0883740.1 LORF2 protein, partial [Crocuta crocuta] diamond 414 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
28828248 28828248 PRJNA1227535_P_NODE_15368_length_274_cov_1.288557_g15245_i0 PRJNA1227535 15368 274 1.288557 3.53064618 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.5 9.2e-7   NR KAF0877091.1 9678 g15245 i0 41.6 1.95985401459854 89 47 96.4 2 272 9 101 185 KAF0877091.1 LORF2 protein, partial [Crocuta crocuta] diamond 537 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
29504196 29504196 PRJNA1227535_P_NODE_28830_length_244_cov_1.625731_g28706_i0 PRJNA1227535 28830 244 1.625731 3.96678364 Crocuta crocuta 9678 Chordata Chordata 47.8 1.58e-4   NR KAF0878405.1 9678 g28706 i0 69 0.35655737704918 29 9 35.7 0 87 1 28 56 KAF0878405.1 LORF2 protein, partial [Crocuta crocuta] diamond 87 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
30704585 30704585 PRJNA1227535_P_NODE_17774_length_266_cov_1.295337_g17651_i0 PRJNA1227535 17774 266 1.295337 3.44559642 Balaenoptera acutorostrata 9767 Chordata Chordata 50.4 9.28e-5   NR XP_057401233.1 9767 g17651 i0 50 0.609022556390977 54 27 60.9 0 264 103 329 382 XP_057401233.1 60S ribosomal export protein NMD3 isoform X3 [Balaenoptera acutorostrata] diamond 162 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera acutorostrata
31684467 31684467 PRJNA1227535_P_NODE_10637_length_290_cov_1.764977_g10514_i0 PRJNA1227535 10637 290 1.764977 5.1184333 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 119 4.82e-32   NR CAI9164419.1 3082113 g10514 i0 77.9 0.796551724137931 77 12 79.7 2 4 234 76 147 CAI9164419.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 231 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;