RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1227535" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30313226 30313226 PRJNA1227535_P_NODE_11652_length_287_cov_1.004673_g11529_i0 PRJNA1227535 11652 287 1.004673 2.88341151 Chlorella 3071 Plants Plants 45.8 0.00542   NR PRW60203.1 3076 g11529 i0 55.6 0.752613240418119 36 16 37.6 0 144 251 594 629 PRW60203.1 DNA repair RAD50 isoform A [Chlorella sorokiniana] diamond 216 45.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
31937554 31937554 PRJNA1227535_P_NODE_24937_length_249_cov_0.886364_g24813_i0 PRJNA1227535 24937 249 0.886364 2.20704636 Trebouxia sp. A1-2 2608996 Plants Plants 72 2.07e-12   NR KAA6421501.1 2608996 g24813 i0 56.7 0.72289156626506 60 26 72.3 0 37 216 85 144 KAA6421501.1 MAG: hypothetical protein FRX49_08445 [Trebouxia sp. A1-2] diamond 180 72 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
32790689 32790689 PRJNA1227535_P_NODE_18900_length_262_cov_1.650794_g18776_i0 PRJNA1227535 18900 262 1.650794 4.32508028 Chlorella vulgaris 3077 Plants Plants 46.2 0.00275   NR KAL4854672.1 3077 g18776 i0 76 0.286259541984733 25 6 28.6 0 6 80 224 248 KAL4854672.1 Major capsid protein [Chlorella vulgaris] diamond 75 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;