RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1227535" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1227535 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7988843 7988843 PRJNA1227535_P_NODE_29207_length_244_cov_0.912281_g29083_i0 PRJNA1227535 29207 244 0.912281 2.22596564 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 162 1.6599999999999998e-45   NR YP_003540812.1 5778 g29083 i0 97.5 0.995901639344262 81 2 99.6 0 244 2 239 319 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 243 162 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30578029 30578029 PRJNA1227535_P_NODE_12173_length_285_cov_1.353774_g12050_i0 PRJNA1227535 12173 285 1.353774 3.8582559 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 74.7 4.52e-14   NR XP_004333702.1 1257118 g12050 i0 40.9 0.978947368421053 93 54 96.8 1 7 282 42 134 XP_004333702.1 glutathione transferase family protein [Acanthamoeba castellanii str. Neff] diamond 279 74.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;