RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1226487" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1226487 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2885957 2885957 PRJNA1226487_P_NODE_64563_length_251_cov_0.865169_g64461_i0 PRJNA1226487 64563 251 0.865169 2.17157419 Mycteria americana 33587 Chordata Chordata 85.9 2.71e-17   NR KAK4822229.1 33587 g64461 i0 59.3 1.93625498007968 81 33 96.8 0 7 249 684 764 KAK4822229.1 hypothetical protein QYF61_011870 [Mycteria americana] diamond 486 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
29283111 29283111 PRJNA1226487_P_NODE_82549_length_209_cov_4.955882_g82447_i0 PRJNA1226487 82549 209 4.955882 10.35779338 Bufotes viridis 30338 Chordata Chordata 47.8 3.96e-4   NR CAK8629749.1 30338 g82447 i0 70 1.00478468899522 30 9 43.1 0 139 50 335 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 210 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
29946471 29946471 PRJNA1226487_P_NODE_47171_length_277_cov_1.509804_g47069_i0 PRJNA1226487 47171 277 1.509804 4.18215708 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0315   NR KAG2459583.1 55291 g47069 i0 48.6 0.379061371841155 35 18 37.9 0 89 193 365 399 KAG2459583.1 PAR14 polymerase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30294315 30294315 PRJNA1226487_P_NODE_17952_length_373_cov_1.493333_g17850_i0 PRJNA1226487 17952 373 1.493333 5.57013209 Gekko japonicus 146911 Chordata Chordata 124 2.8799999999999997e-30   NR XP_015284848.1 146911 g17850 i0 57.3 1.54423592493298 96 41 77.2 0 30 317 14 109 XP_015284848.1 PREDICTED: thioredoxin reductase 3 isoform X1 [Gekko japonicus] diamond 576 124 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
31400120 31400120 PRJNA1226487_P_NODE_42716_length_284_cov_1.459716_g42614_i0 PRJNA1226487 42716 284 1.459716 4.14559344 Apodemus speciosus 105296 Chordata Chordata 62.8 5.4e-9   NR GAB1289670.1 105296 g42614 i0 73 0.73943661971831 37 10 39.1 0 114 4 137 173 GAB1289670.1 Phosphoglucomutase-2 [Apodemus speciosus] diamond 210 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
31969250 31969250 PRJNA1226487_P_NODE_59978_length_257_cov_1.673913_g59876_i0 PRJNA1226487 59978 257 1.673913 4.30195641 Rattus norvegicus 10116 Chordata Chordata 51.2 3.9e-6   NR EDL82388.1 10116 g59876 i0 77.4 0.361867704280156 31 7 36.2 0 97 5 3 33 EDL82388.1 rCG29080 [Rattus norvegicus] diamond 93 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;