RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1226487" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1226487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9262955 9262955 PRJNA1226487_P_NODE_28868_length_321_cov_2.814516_g28766_i0 PRJNA1226487 28868 321 2.814516 9.03459636 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 128 4.65e-32   NR XP_011132110.1 110365 g28766 i0 64.3 0.91588785046729 98 34 90.7 1 5 295 425 522 XP_011132110.1 DEAD-box RNA helicase [Gregarina niphandrodes] diamond 294 128 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
31260610 31260610 PRJNA1226487_P_NODE_26495_length_330_cov_11.626459_g26393_i0 PRJNA1226487 26495 330 11.626459 38.3673147 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 144 9.03e-41   NR XP_029219763.1 94643 g26393 i0 64.8 8.85454545454546 108 36 96.4 2 324 7 79 186 XP_029219763.1 putative eukaryotic initiation factor-2 beta [Besnoitia besnoiti] diamond 2922 144 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
31260612 31260612 PRJNA1226487_P_NODE_50675_length_271_cov_4.565657_g50573_i0 PRJNA1226487 50675 271 4.565657 12.37293047 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 114 1.3600000000000002e-27   NR KAF7457129.1 83540 g50573 i0 61.1 6.97416974169742 90 34 98.5 1 4 270 337 426 KAF7457129.1 thioredoxin reductase [Cryptosporidium felis] diamond 1890 115 0.991304347826087 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;