RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1226487" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1226487 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29819796 29819796 PRJNA1226487_P_NODE_40471_length_288_cov_1.432558_g40369_i0 PRJNA1226487 40471 288 1.432558 4.12576704 Deinococcus xinjiangensis 457454 Bacteria Bacteria 67.8 2.82e-12   NR WP_353541218.1 457454 g40369 i0 88.2 0.354166666666667 34 4 35.4 0 179 78 72 105 WP_353541218.1 winged helix-turn-helix domain-containing protein [Deinococcus xinjiangensis] diamond 102 67.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
32790683 32790683 PRJNA1226487_P_NODE_60060_length_257_cov_1.673913_g59958_i0 PRJNA1226487 60060 257 1.673913 4.30195641 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 91.3 1.54e-19   NR WP_104990626.1 2080419 g59958 i0 90.6 1.23735408560311 53 4 61.9 1 1 159 309 360 WP_104990626.1 protease complex subunit PrcB family protein [Deinococcus sp. NW-56] diamond 318 91.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;