RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1226487" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1226487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27135537 27135537 PRJNA1226487_P_NODE_51282_length_270_cov_7.913706_g51180_i0 PRJNA1226487 51282 270 7.913706 21.3670062 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 1.0099999999999999e-32   NR XP_004367841.1 1257118 g51180 i0 73.9 0.977777777777778 88 15 97.8 1 6 269 197 276 XP_004367841.1 domain found in dishevelled, egl10, and pleckstrin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 264 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28304415 28304415 PRJNA1226487_P_NODE_1126_length_922_cov_5.439340_g1051_i0 PRJNA1226487 1126 922 5.43934 50.1507148 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 160 5.25e-40   NR KAH3743581.1 1580589 g1051 i0 36.4 1.72451193058568 264 163 85.9 1 909 118 840 1098 KAH3743581.1 alpha-actinin A [Pelomyxa schiedti] diamond 1590 160 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31494990 31494990 PRJNA1226487_P_NODE_516_length_1182_cov_8.820559_g6_i1 PRJNA1226487 516 1182 8.820559 104.25900738 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 186 1.2999999999999998e-47   NR KAH3762577.1 1580589 g6 i1 36.1 1.59137055837563 319 199 79.7 2 152 1093 1120 1438 KAH3762577.1 alpha-actinin A [Pelomyxa schiedti] diamond 1881 186 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;