RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1218818" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1218818 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8699352 8699352 PRJNA1218818_P_NODE_28587_length_242_cov_0.911243_g28520_i0 PRJNA1218818 28587 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 132 9.089999999999999e-35   NR XP_067784683.1 4785 g28520 i0 78.5 29.504132231405 79 15 97.9 1 2 238 144 220 XP_067784683.1 acyl-CoA dehydrogenase [Phytophthora cinnamomi] diamond 7140 133 0.992481203007519 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
27546669 27546669 PRJNA1218818_P_NODE_23164_length_257_cov_1.472826_g23097_i0 PRJNA1218818 23164 257 1.472826 3.78516282 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 97.4 1.6400000000000002e-21   NR KAF1332571.1 82926 g23097 i0 51.2 4.92607003891051 84 41 98.1 0 4 255 39 122 KAF1332571.1 Acy1-like metalloprotease, partial [Globisporangium splendens] diamond 1266 97.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
29283066 29283066 PRJNA1218818_P_NODE_21289_length_270_cov_1.558376_g21222_i0 PRJNA1218818 21289 270 1.558376 4.2076152 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.51e-8   NR KAG6952591.1 29920 g21222 i0 36.7 3.01111111111111 90 54 97.8 2 5 268 32 120 KAG6952591.1 hypothetical protein JG687_00012914, partial [Phytophthora cactorum] diamond 813 60.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
31671692 31671692 PRJNA1218818_P_NODE_22877_length_259_cov_1.252688_g22810_i0 PRJNA1218818 22877 259 1.252688 3.24446192 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 123 1.63e-30   NR KAJ0412157.1 114742 g22810 i0 66.7 10.6216216216216 84 27 97.3 1 2 253 620 702 KAJ0412157.1 hypothetical protein ATCC90586_005770 [Pythium insidiosum] diamond 2751 123 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;