RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1218818" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1218818 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29630164 29630164 PRJNA1218818_P_NODE_25910_length_247_cov_0.885057_g25843_i0 PRJNA1218818 25910 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.4 6.84e-4   NR XP_004334874.1 1257118 g25843 i0 39.1 0.777327935222672 64 39 77.7 0 50 241 19 82 XP_004334874.1 SCPlike extracellular, putative [Acanthamoeba castellanii str. Neff] diamond 192 47.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29661677 29661677 PRJNA1218818_P_NODE_25930_length_247_cov_0.885057_g25863_i0 PRJNA1218818 25930 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 4.96e-7   NR XP_004338193.1 1257118 g25863 i0 50 6.17004048582996 66 33 80.2 0 49 246 154 219 XP_004338193.1 peptide chain release factor eRF/aRF, subunit 1, putative [Acanthamoeba castellanii str. Neff] diamond 1524 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30357588 30357588 PRJNA1218818_P_NODE_26912_length_245_cov_0.895349_g26845_i0 PRJNA1218818 26912 245 0.895349 2.19360505 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.5 5.67e-6   NR XP_004344020.1 1257118 g26845 i0 36.3 0.979591836734694 80 50 98 1 1 240 232 310 XP_004344020.1 START domain containing protein [Acanthamoeba castellanii str. Neff] diamond 240 53.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;