RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1218818" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1218818 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27104149 27104149 PRJNA1218818_P_NODE_10042_length_384_cov_1.733119_g9975_i0 PRJNA1218818 10042 384 1.733119 6.65517696 Lyophyllum shimeji 47721 Fungi Fungi 54.7 1.12e-5   NR GLB37172.1 47721 g9975 i0 33.6 5.8203125 107 68 82.8 3 323 6 268 372 GLB37172.1 putative retrotransposable element tf2 155 kda protein type 1-like [Lyophyllum shimeji] diamond 2235 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Lyophyllaceae Lyophyllum Lyophyllum shimeji

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;