RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1218818" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1218818 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28051812 28051812 PRJNA1218818_P_NODE_24425_length_250_cov_1.446328_g24358_i0 PRJNA1218818 24425 250 1.446328 3.61582 Phycisphaerales bacterium 2052180 Bacteria Bacteria 53.9 4.57e-6   NR MCC6357547.1 2052180 g24358 i0 46 0.6 50 20 60 1 31 180 329 371 MCC6357547.1 CHRD domain-containing protein [Phycisphaerales bacterium] diamond 150 53.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
30989106 30989106 PRJNA1218818_P_NODE_26034_length_247_cov_0.885057_g25967_i0 PRJNA1218818 26034 247 0.885057 2.18609079 Prosthecobacter sp. 1965333 Bacteria Bacteria 91.3 3.37e-19   NR WP_395753441.1 1965333 g25967 i0 68.1 1.76113360323887 72 23 87.4 0 4 219 539 610 WP_395753441.1 cadherin-like beta sandwich domain-containing protein [Prosthecobacter sp.] diamond 435 91.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
31178285 31178285 PRJNA1218818_P_NODE_24955_length_249_cov_0.875000_g24888_i0 PRJNA1218818 24955 249 0.875 2.17875 Fimbriiglobus sp. 1914235 Bacteria Bacteria 103 8.19e-24   NR MCU0704300.1 1914235 g24888 i0 55.4 1 83 37 100 0 249 1 50 132 MCU0704300.1 Flp pilus assembly protein CpaB [Fimbriiglobus sp.] diamond 249 103 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Fimbriiglobus Fimbriiglobus sp.
31241638 31241638 PRJNA1218818_P_NODE_26395_length_246_cov_0.890173_g26328_i0 PRJNA1218818 26395 246 0.890173 2.18982558 Pirellulales bacterium 2715253 Bacteria Bacteria 155 3.45e-46   NR MFO0884466.1 2715253 g26328 i0 91.1 0.963414634146341 79 7 96.3 0 245 9 63 141 MFO0884466.1 hypothetical protein [Pirellulales bacterium] diamond 237 155 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;