RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1218818" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 9 ✖

bioproject 1

  • PRJNA1218818 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9261824 9261824 PRJNA1218818_P_NODE_28288_length_242_cov_0.911243_g28221_i0 PRJNA1218818 28288 242 0.911243 2.20520806 Prunus speciosa 378228 Plants Plants 62.4 5.8e-10   NR BFG23786.1 378228 g28221 i0 49.2 6.71900826446281 65 33 80.6 0 37 231 22 86 BFG23786.1 hypothetical protein CerSpe_100590 [Prunus speciosa] diamond 1626 62.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus speciosa
13087516 13087516 PRJNA1218818_P_NODE_27471_length_244_cov_0.900585_g27404_i0 PRJNA1218818 27471 244 0.900585 2.1974274 Magnoliopsida 3398 Plants Plants 132 1.54e-33   NR XP_022957583.1 3662 g27404 i0 73.1 109.217213114754 78 21 95.9 0 244 11 454 531 XP_022957583.1 2-oxoglutarate dehydrogenase, mitochondrial-like [Cucurbita moschata] diamond 26649 133 0.992481203007519 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucurbita Cucurbita moschata
29270236 29270236 PRJNA1218818_P_NODE_28309_length_242_cov_0.911243_g28242_i0 PRJNA1218818 28309 242 0.911243 2.20520806 Magnoliopsida 3398 Plants Plants 125 1.12e-34   NR CAA7404197.1 51605 g28242 i0 71.8 3.89256198347107 78 22 96.7 0 237 4 7 84 CAA7404197.1 unnamed protein product [Spirodela intermedia] diamond 942 125 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Alismatales Araceae Spirodela Spirodela intermedia
29554422 29554422 PRJNA1218818_P_NODE_27550_length_244_cov_0.900585_g27483_i0 PRJNA1218818 27550 244 0.900585 2.1974274 Eukaryota 2759 Plants Plants 139 2.18e-40   NR XP_043621716.1 72917 g27483 i0 79 15.922131147541 81 17 99.6 0 2 244 19 99 XP_043621716.1 40S ribosomal protein S16-like [Erigeron canadensis] diamond 3885 139 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Erigeron Erigeron canadensis
30799265 30799265 PRJNA1218818_P_NODE_27534_length_244_cov_0.900585_g27467_i0 PRJNA1218818 27534 244 0.900585 2.1974274 Sphagnum troendelagicum 128251 Plants Plants 61.2 8.64e-10   NR CAK9201008.1 128251 g27467 i0 52.8 3.25819672131148 53 24 65.2 1 222 64 16 67 CAK9201008.1 unnamed protein product [Sphagnum troendelagicum] diamond 795 61.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum troendelagicum
30913133 30913133 PRJNA1218818_P_NODE_17434_length_299_cov_1.057522_g17367_i0 PRJNA1218818 17434 299 1.057522 3.16199078 Eukaryota 2759 Plants Plants 161 6.129999999999998e-47   NR KAK1315382.1 4465 g17367 i0 80.8 158.929765886288 99 19 99.3 0 298 2 65 163 KAK1315382.1 40S ribosomal protein S3-3 [Acorus calamus] diamond 47520 162 0.993827160493827 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Acorales Acoraceae Acorus Acorus calamus
32082942 32082942 PRJNA1218818_P_NODE_28358_length_242_cov_0.911243_g28291_i0 PRJNA1218818 28358 242 0.911243 2.20520806 Eukaryota 2759 Plants Plants 52.8 1.02e-5   NR NP_001150062.1 4577 g28291 i0 41.9 7.52479338842975 62 36 76.9 0 236 51 37 98 NP_001150062.1 thiol protease SEN102 precursor [Zea mays] diamond 1821 53.1 0.994350282485876 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
32651862 32651862 PRJNA1218818_P_NODE_25460_length_248_cov_0.880000_g25393_i0 PRJNA1218818 25460 248 0.88 2.1824 Streptophyta 35493 Plants Plants 72 1.93e-12   NR XP_006841407.1 13333 g25393 i0 43.9 3.0241935483871 82 43 99.2 1 246 1 367 445 XP_006841407.1 pyrophosphate-energized vacuolar membrane proton pump 1 [Amborella trichopoda] diamond 750 72 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Amborellales Amborellaceae Amborella Amborella trichopoda
32727955 32727955 PRJNA1218818_P_NODE_26860_length_245_cov_0.895349_g26793_i0 PRJNA1218818 26860 245 0.895349 2.19360505 Vanilla planifolia 51239 Plants Plants 73.6 5.2e-13   NR KAG0490418.1 51239 g26793 i0 45.7 11.9020408163265 81 43 99.2 1 243 1 87 166 KAG0490418.1 hypothetical protein HPP92_007281 [Vanilla planifolia] diamond 2916 73.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Orchidaceae Vanilla Vanilla planifolia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;