RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1218818" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA1218818 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26964887 26964887 PRJNA1218818_P_NODE_25502_length_248_cov_0.880000_g25435_i0 PRJNA1218818 25502 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.9 2.91e-12   NR XP_003290595.1 5786 g25435 i0 46.3 6.73790322580645 82 42 99.2 1 246 1 42 121 XP_003290595.1 RNA polymerase II core subunit [Dictyostelium purpureum] diamond 1671 70.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27388968 27388968 PRJNA1218818_P_NODE_27383_length_244_cov_0.900585_g27316_i0 PRJNA1218818 27383 244 0.900585 2.1974274 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 64.7 6.76e-10   NR KYQ91113.1 361077 g27316 i0 42.4 2.04098360655738 92 38 98.4 2 242 3 519 607 KYQ91113.1 myotubularin-related protein [Tieghemostelium lacteum] diamond 498 64.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29630164 29630164 PRJNA1218818_P_NODE_25910_length_247_cov_0.885057_g25843_i0 PRJNA1218818 25910 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.4 6.84e-4   NR XP_004334874.1 1257118 g25843 i0 39.1 0.777327935222672 64 39 77.7 0 50 241 19 82 XP_004334874.1 SCPlike extracellular, putative [Acanthamoeba castellanii str. Neff] diamond 192 47.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29661677 29661677 PRJNA1218818_P_NODE_25930_length_247_cov_0.885057_g25863_i0 PRJNA1218818 25930 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 4.96e-7   NR XP_004338193.1 1257118 g25863 i0 50 6.17004048582996 66 33 80.2 0 49 246 154 219 XP_004338193.1 peptide chain release factor eRF/aRF, subunit 1, putative [Acanthamoeba castellanii str. Neff] diamond 1524 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29775481 29775481 PRJNA1218818_P_NODE_27571_length_244_cov_0.900585_g27504_i0 PRJNA1218818 27571 244 0.900585 2.1974274 Dictyosteliales 2058949 Evosea other_Eukaryota 62.4 4.55e-9   NR XP_003289339.1 5786 g27504 i0 44.8 3.57786885245902 58 31 70.1 1 205 35 642 699 XP_003289339.1 uncharacterized protein DICPUDRAFT_98323 [Dictyostelium purpureum] diamond 873 62.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
30167344 30167344 PRJNA1218818_P_NODE_28512_length_242_cov_0.911243_g28445_i0 PRJNA1218818 28512 242 0.911243 2.20520806 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 77.8 7.43e-15   NR KYR03061.1 361077 g28445 i0 50 0.892561983471074 72 36 89.3 0 236 21 4 75 KYR03061.1 bisphosphate nucleotidase [Tieghemostelium lacteum] diamond 216 77.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
30262567 30262567 PRJNA1218818_P_NODE_24752_length_250_cov_0.870056_g24685_i0 PRJNA1218818 24752 250 0.870056 2.17514 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 45.8 0.00327   NR XP_004185078.1 370355 g24685 i0 47.8 0.552 46 23 55.2 1 21 158 561 605 XP_004185078.1 hypothetical protein EIN_012090 [Entamoeba invadens IP1] diamond 138 45.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
30357588 30357588 PRJNA1218818_P_NODE_26912_length_245_cov_0.895349_g26845_i0 PRJNA1218818 26912 245 0.895349 2.19360505 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.5 5.67e-6   NR XP_004344020.1 1257118 g26845 i0 36.3 0.979591836734694 80 50 98 1 1 240 232 310 XP_004344020.1 START domain containing protein [Acanthamoeba castellanii str. Neff] diamond 240 53.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32444198 32444198 PRJNA1218818_P_NODE_27439_length_244_cov_0.900585_g27372_i0 PRJNA1218818 27439 244 0.900585 2.1974274 Cavenderia fasciculata 261658 Evosea other_Eukaryota 105 3.0899999999999993e-24   NR XP_004359378.1 261658 g27372 i0 63.9 1.77049180327869 72 26 88.5 0 216 1 410 481 XP_004359378.1 delta 9 fatty acid desaturase [Cavenderia fasciculata] diamond 432 105 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;