RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1218816" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1218816 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4160575 4160575 PRJNA1218816_P_NODE_60044_length_244_cov_0.900585_g59611_i0 PRJNA1218816 60044 244 0.900585 2.1974274 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 134 1.63e-38   NR RYD67074.1 2026800 g59611 i0 88.5 0.959016393442623 78 8 95.9 1 5 238 15 91 RYD67074.1 MAG: J domain-containing protein, partial [Verrucomicrobiaceae bacterium] diamond 234 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27420606 27420606 PRJNA1218816_P_NODE_53443_length_252_cov_0.821229_g53010_i0 PRJNA1218816 53443 252 0.821229 2.06949708 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0407   NR MEI6341235.1 2026799 g53010 i0 35.5 0.904761904761905 76 40 79.8 2 42 242 84 159 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 228 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28102030 28102030 PRJNA1218816_P_NODE_54725_length_250_cov_0.870056_g54292_i0 PRJNA1218816 54725 250 0.870056 2.17514 Prosthecobacter 48463 Bacteria Bacteria 154 5.79e-42   NR WP_184341396.1 48466 g54292 i0 90.4 10.956 83 8 99.6 0 2 250 394 476 WP_184341396.1 M3 family oligoendopeptidase [Prosthecobacter vanneervenii] diamond 2739 155 0.993548387096774 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
30660209 30660209 PRJNA1218816_P_NODE_56913_length_248_cov_0.880000_g56480_i0 PRJNA1218816 56913 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 89.4 1.56e-18   NR RYD84082.1 2026800 g56480 i0 55.6 1.94758064516129 81 34 98 1 6 248 328 406 RYD84082.1 MAG: hypothetical protein EOP84_06490, partial [Verrucomicrobiaceae bacterium] diamond 483 90.1 0.992230854605993 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;