RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1218816" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30344828 30344828 PRJNA1218816_P_NODE_54732_length_250_cov_0.870056_g54299_i0 PRJNA1218816 54732 250 0.870056 2.17514 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 6.419999999999999e-24   NR XP_004333651.1 1257118 g54299 i0 55.4 1.992 83 37 99.6 0 2 250 189 271 XP_004333651.1 coronin3, putative [Acanthamoeba castellanii str. Neff] diamond 498 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31779332 31779332 PRJNA1218816_P_NODE_35597_length_329_cov_1.453125_g35164_i0 PRJNA1218816 35597 329 1.453125 4.78078125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 91.3 7.23e-21   NR XP_004333787.1 1257118 g35164 i0 46.8 0.857142857142857 94 49 84.8 1 282 4 3 96 XP_004333787.1 Cofilin/tropomyosin-type actin-binding protein [Acanthamoeba castellanii str. Neff] diamond 282 91.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;