RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1218816" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1218816 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29630163 29630163 PRJNA1218816_P_NODE_61710_length_242_cov_0.911243_g61277_i0 PRJNA1218816 61710 242 0.911243 2.20520806 Deinococcus sp. Arct2-2 2568653 Bacteria Bacteria 51.6 4.06e-6   NR WP_136367499.1 2568653 g61277 i0 57.9 2.15702479338843 38 16 47.1 0 240 127 75 112 WP_136367499.1 transposase [Deinococcus sp. Arct2-2] diamond 522 51.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. Arct2-2
31209650 31209650 PRJNA1218816_P_NODE_51075_length_260_cov_1.411765_g50642_i0 PRJNA1218816 51075 260 1.411765 3.670589 Deinococcus antarcticus 1298767 Bacteria Bacteria 59.7 4.95e-8   NR WP_380078508.1 1298767 g50642 i0 100 0.334615384615385 29 0 33.5 0 172 258 1 29 WP_380078508.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type [Deinococcus antarcticus] diamond 87 59.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
32000937 32000937 PRJNA1218816_P_NODE_60858_length_243_cov_0.905882_g60425_i0 PRJNA1218816 60858 243 0.905882 2.20129326 Deinococcus antarcticus 1298767 Bacteria Bacteria 149 2.54e-41   NR WP_380078057.1 1298767 g60425 i0 98.8 1 81 1 100 0 1 243 26 106 WP_380078057.1 MFS transporter [Deinococcus antarcticus] diamond 243 149 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;