RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1218816" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1218816 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18185086 18185086 PRJNA1218816_P_NODE_56615_length_248_cov_0.880000_g56182_i0 PRJNA1218816 56615 248 0.88 2.1824 Bacillati 1783272 Bacteria Bacteria 117 9.1e-30   NR HMX46806.1 2711154 g56182 i0 70.3 2.68548387096774 74 22 89.5 0 246 25 120 193 HMX46806.1 ATP-grasp domain-containing protein [Candidatus Obscuribacter sp.] diamond 666 117 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Obscuribacterales Candidatus Obscuribacteraceae Candidatus Obscuribacter Candidatus Obscuribacter sp.
27609886 27609886 PRJNA1218816_P_NODE_59364_length_245_cov_0.895349_g58931_i0 PRJNA1218816 59364 245 0.895349 2.19360505 Gloeocapsa sp. UFS-A4-WI-NPMV-4B04 2839657 Bacteria Bacteria 142 3.43e-41   NR MBW4638742.1 2839657 g58931 i0 92.5 0.979591836734694 80 6 98 0 5 244 40 119 MBW4638742.1 hypothetical protein [Gloeocapsa sp. UFS-A4-WI-NPMV-4B04] diamond 240 142 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Gloeocapsa Gloeocapsa sp. UFS-A4-WI-NPMV-4B04
32000936 32000936 PRJNA1218816_P_NODE_54918_length_250_cov_0.870056_g54485_i0 PRJNA1218816 54918 250 0.870056 2.17514 Gloeocapsopsis dulcis 2859516 Bacteria Bacteria 129 1.47e-32   NR WP_105218772.1 2859516 g54485 i0 84.3 0.996 83 13 99.6 0 249 1 211 293 WP_105218772.1 filamentous hemagglutinin N-terminal domain-containing protein [Gloeocapsopsis dulcis] diamond 249 129 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Gloeocapsopsis Gloeocapsopsis dulcis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;