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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA1215774" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 15 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1215774 · 15 ✖

analysis 1

  • diamond · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5434780 5434780 PRJNA1215774_P_NODE_77985_length_245_cov_0.895349_g77665_i0 PRJNA1215774 77985 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 136 2.9999999999999996e-39   NR MBC7741831.1 28201 g77665 i0 80 4.91020408163265 80 16 98 0 242 3 46 125 MBC7741831.1 organic hydroperoxide resistance protein [Bdellovibrio sp.] diamond 1203 137 0.992700729927007 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27009290 27009290 PRJNA1215774_P_NODE_74722_length_247_cov_0.885057_g74402_i0 PRJNA1215774 74722 247 0.885057 2.18609079 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 48.9 1.6e-4   NR MBX3020633.1 2053517 g74402 i0 31.7 0.995951417004049 82 52 94.7 1 239 6 101 182 MBX3020633.1 hypothetical protein [Bdellovibrionales bacterium] diamond 246 48.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27198875 27198875 PRJNA1215774_P_NODE_64882_length_259_cov_1.279570_g64562_i0 PRJNA1215774 64882 259 1.27957 3.3140863 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 111 1.8499999999999999e-28   NR MBY0516699.1 2081706 g64562 i0 58.6 1.00772200772201 87 34 99.6 2 259 2 61 146 MBY0516699.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 261 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27357320 27357320 PRJNA1215774_P_NODE_69963_length_250_cov_0.870056_g69643_i0 PRJNA1215774 69963 250 0.870056 2.17514 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 155 1.2599999999999999e-42   NR MBX2993264.1 2026715 g69643 i0 95.2 0.996 83 4 99.6 0 250 2 236 318 MBX2993264.1 twin-arginine translocation signal domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 249 155 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27723693 27723693 PRJNA1215774_P_NODE_71904_length_249_cov_0.875000_g71584_i0 PRJNA1215774 71904 249 0.875 2.17875 Pseudobacteriovorax 1769746 Bacteria Bacteria 50.4 2.19e-5   NR NRA63173.1 2020859 g71584 i0 55.3 0.891566265060241 38 17 45.8 0 5 118 106 143 NRA63173.1 hypothetical protein [Pseudobacteriovorax sp.] diamond 222 50.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax sp.
28670645 28670645 PRJNA1215774_P_NODE_76547_length_246_cov_0.890173_g76227_i0 PRJNA1215774 76547 246 0.890173 2.18982558 Bdellovibrionota 3018035 Bacteria Bacteria 65.5 3.69e-10   NR WP_324961119.1 1971216 g76227 i0 42.3 2.70731707317073 71 41 86.6 0 18 230 61 131 WP_324961119.1 hypothetical protein [Oligoflexus sp.] diamond 666 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
29314796 29314796 PRJNA1215774_P_NODE_73049_length_248_cov_0.880000_g72729_i0 PRJNA1215774 73049 248 0.88 2.1824 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 55.8 9.1e-7   NR MBY0518054.1 2081706 g72729 i0 37.3 1.00403225806452 83 51 99.2 1 248 3 257 339 MBY0518054.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 249 55.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29346444 29346444 PRJNA1215774_P_NODE_79369_length_244_cov_0.900585_g79049_i0 PRJNA1215774 79369 244 0.900585 2.1974274 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 152 6.36e-42   NR MBY0516215.1 2081706 g79049 i0 86.4 1.99180327868852 81 11 99.6 0 2 244 167 247 MBY0516215.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 486 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29598665 29598665 PRJNA1215774_P_NODE_79290_length_244_cov_0.900585_g78970_i0 PRJNA1215774 79290 244 0.900585 2.1974274 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 129 7.31e-35   NR MBY0517142.1 2081706 g78970 i0 82.7 1.99180327868852 81 14 99.6 0 1 243 67 147 MBY0517142.1 enoyl-CoA hydratase/isomerase family protein [Bacteriovoracaceae bacterium] diamond 486 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
30325999 30325999 PRJNA1215774_P_NODE_81512_length_243_cov_0.905882_g81192_i0 PRJNA1215774 81512 243 0.905882 2.20129326 Oligoflexia bacterium 2599941 Bacteria Bacteria 159 7.29e-44   NR MCO5143777.1 2599941 g81192 i0 95 1.97530864197531 80 4 98.8 0 241 2 389 468 MCO5143777.1 translational GTPase TypA [Oligoflexia bacterium] diamond 480 159 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30672874 30672874 PRJNA1215774_P_NODE_71913_length_249_cov_0.875000_g71593_i0 PRJNA1215774 71913 249 0.875 2.17875 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 73.6 2.86e-13   NR MBX2995555.1 2026715 g71593 i0 47.6 0.987951807228916 82 43 98.8 0 248 3 160 241 MBX2995555.1 DUF4097 family beta strand repeat protein [Pseudobdellovibrionaceae bacterium] diamond 246 73.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31146513 31146513 PRJNA1215774_P_NODE_84415_length_241_cov_0.916667_g84095_i0 PRJNA1215774 84415 241 0.916667 2.20916747 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 120 4.98e-30   NR MEO5667462.1 3034175 g84095 i0 68.4 1.95435684647303 79 25 98.3 0 237 1 224 302 MEO5667462.1 aminotransferase class V-fold PLP-dependent enzyme [Bdellovibrionota bacterium] diamond 471 120 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31747741 31747741 PRJNA1215774_P_NODE_76277_length_246_cov_0.890173_g75957_i0 PRJNA1215774 76277 246 0.890173 2.18982558 Oligoflexus sp. 1971216 Bacteria Bacteria 100 1.7e-23   NR WP_324958699.1 1971216 g75957 i0 60.5 0.98780487804878 81 32 98.8 0 244 2 108 188 WP_324958699.1 MurR/RpiR family transcriptional regulator [Oligoflexus sp.] diamond 243 100 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
32286015 32286015 PRJNA1215774_P_NODE_75399_length_247_cov_0.885057_g75079_i0 PRJNA1215774 75399 247 0.885057 2.18609079 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 64.7 4.63e-10   NR MBY0517173.1 2081706 g75079 i0 71.8 0.473684210526316 39 11 47.4 0 130 246 1 39 MBY0517173.1 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF [Bacteriovoracaceae bacterium] diamond 117 64.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32304779 32304779 PRJNA1215774_P_NODE_74779_length_247_cov_0.885057_g74459_i0 PRJNA1215774 74779 247 0.885057 2.18609079 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 158 9.2e-46   NR AZZ37103.1 1916293 g74459 i0 95.1 1.9919028340081 82 4 99.6 0 1 246 112 193 AZZ37103.1 HD family phosphohydrolase [Bdellovibrio sp. qaytius] diamond 492 158 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;