RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1214993" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1214993 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4157280 4157280 PRJNA1214993_P_NODE_16744_length_273_cov_2.650000_g16558_i0 PRJNA1214993 16744 273 2.65 7.2345 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 117 1.5599999999999998e-31   NR KAF4697926.1 32597 g16558 i0 62.6 23.978021978022 91 34 100 0 273 1 14 104 KAF4697926.1 60S ribosomal protein L5, partial [Perkinsus olseni] diamond 6546 118 0.991525423728814 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32664691 32664691 PRJNA1214993_P_NODE_20260_length_252_cov_0.871508_g20074_i0 PRJNA1214993 20260 252 0.871508 2.19620016 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 134 3.97e-36   NR XP_002774056.1 423536 g20074 i0 75.6 1.02380952380952 86 19 100 1 1 252 129 214 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 258 134 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;