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contig_metadata

36 rows where analysis = "diamond", bioproject = "PRJNA1214993" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 36 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1214993 · 36 ✖

analysis 1

  • diamond · 36 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1605037 1605037 PRJNA1214993_P_NODE_17062_length_271_cov_1.404040_g16876_i0 PRJNA1214993 17062 271 1.40404 3.8049484 Kytococcus aerolatus 592308 Bacteria Bacteria 182 2.859999999999999e-55   NR WP_088818702.1 592308 g16876 i0 98.9 0.996309963099631 90 1 99.6 0 2 271 4 93 WP_088818702.1 transporter substrate-binding domain-containing protein [Kytococcus aerolatus] diamond 270 182 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus aerolatus
6708102 6708102 PRJNA1214993_P_NODE_17006_length_271_cov_2.191919_g16820_i0 PRJNA1214993 17006 271 2.191919 5.94010049 Actinomycetota bacterium 2900548 Bacteria Bacteria 160 1.86e-48   NR MBS1889789.1 2900548 g16820 i0 85.6 1.99261992619926 90 13 99.6 0 271 2 31 120 MBS1889789.1 hypothetical protein [Actinomycetota bacterium] diamond 540 160 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
13798789 13798789 PRJNA1214993_P_NODE_25171_length_243_cov_1.835294_g24985_i0 PRJNA1214993 25171 243 1.835294 4.45976442 Micrococcus cohnii 993416 Bacteria Bacteria 166 1.1399999999999999e-48   NR WP_184240718.1 993416 g24985 i0 100 1 81 0 100 0 1 243 126 206 WP_184240718.1 DUF4031 domain-containing protein [Micrococcus cohnii] diamond 243 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus cohnii
16907468 16907468 PRJNA1214993_P_NODE_20514_length_251_cov_0.876404_g20328_i0 PRJNA1214993 20514 251 0.876404 2.19977404 Kytococcus aerolatus 592308 Bacteria Bacteria 168 2.32e-50   NR WP_088817606.1 592308 g20328 i0 100 0.99203187250996006 83 0 99.2 0 1 249 91 173 WP_088817606.1 type 1 glutamine amidotransferase [Kytococcus aerolatus] diamond 249 168 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus aerolatus
18896943 18896943 PRJNA1214993_P_NODE_21055_length_250_cov_0.881356_g20869_i0 PRJNA1214993 21055 250 0.881356 2.20339 Micrococcus cohnii 993416 Bacteria Bacteria 153 6.11e-41   NR WP_184240754.1 993416 g20869 i0 98.8 0.996 83 1 99.6 0 2 250 134 216 WP_184240754.1 ATP-dependent RNA helicase [Micrococcus cohnii] diamond 249 153 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus cohnii
27072622 27072622 PRJNA1214993_P_NODE_16802_length_273_cov_1.470000_g16616_i0 PRJNA1214993 16802 273 1.47 4.0131 Nocardia arizonensis 1141647 Bacteria Bacteria 42.7 0.0419   NR WP_054816819.1 1141647 g16616 i0 40.9 0.483516483516484 44 26 48.4 0 240 109 93 136 WP_054816819.1 TlpA family protein disulfide reductase [Nocardia arizonensis] diamond 132 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia arizonensis
27167324 27167324 PRJNA1214993_P_NODE_19662_length_253_cov_0.866667_g19476_i0 PRJNA1214993 19662 253 0.866667 2.19266751 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 77.8 1.92e-14   NR HVN52555.1 2201156 g19476 i0 48.2 1.99209486166008 85 42 98.4 1 252 4 418 502 HVN52555.1 ABC transporter substrate-binding protein [Acidimicrobiales bacterium] diamond 504 77.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
27198835 27198835 PRJNA1214993_P_NODE_10502_length_338_cov_1.743396_g10316_i0 PRJNA1214993 10502 338 1.743396 5.89267848 Actinomycetota bacterium 2900548 Bacteria Bacteria 84.7 1.38e-16   NR MBS1890115.1 2900548 g10316 i0 53.3 0.665680473372781 75 32 64.8 2 2 220 317 390 MBS1890115.1 hypothetical protein [Actinomycetota bacterium] diamond 225 84.7 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27483468 27483468 PRJNA1214993_P_NODE_21743_length_249_cov_0.886364_g21557_i0 PRJNA1214993 21743 249 0.886364 2.20704636 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 42.7 0.039   NR MBI5105276.1 1909295 g21557 i0 47.5 0.710843373493976 59 26 65.1 2 40 201 254 312 MBI5105276.1 hypothetical protein [Solirubrobacterales bacterium] diamond 177 42.7 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
27609833 27609833 PRJNA1214993_P_NODE_18784_length_258_cov_1.686486_g18598_i0 PRJNA1214993 18784 258 1.686486 4.35113388 Corynebacterium sp. LK1 1720 Bacteria Bacteria 41.6 0.0394   NR TXS81785.1 2022656 g18598 i0 36.1 0.709302325581395 61 39 70.9 0 195 13 31 91 TXS81785.1 hypothetical protein CHU70_10995 [Corynebacterium sp. LK10] diamond 183 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. LK10
27673053 27673053 PRJNA1214993_P_NODE_16224_length_277_cov_1.514706_g16038_i0 PRJNA1214993 16224 277 1.514706 4.19573562 Kytococcus aerolatus 592308 Bacteria Bacteria 127 2.04e-34   NR WP_088817974.1 592308 g16038 i0 100 0.671480144404332 62 0 67.1 0 186 1 1 62 WP_088817974.1 NUDIX hydrolase [Kytococcus aerolatus] diamond 186 127 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus aerolatus
27799405 27799405 PRJNA1214993_P_NODE_9184_length_360_cov_1.972125_g8998_i0 PRJNA1214993 9184 360 1.972125 7.09965 Amycolatopsis nigrescens 381445 Bacteria Bacteria 137 1.57e-35   NR WP_020672025.1 381445 g8998 i0 52.5 8.825 118 56 98.3 0 3 356 358 475 WP_020672025.1 alpha/beta hydrolase [Amycolatopsis nigrescens] diamond 3177 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis nigrescens
27830733 27830733 PRJNA1214993_P_NODE_25084_length_244_cov_0.894737_g24898_i0 PRJNA1214993 25084 244 0.894737 2.18315828 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 41.2 0.0498   NR HEX5300664.1 2339230 g24898 i0 36.4 0.676229508196721 55 31 62.7 1 212 60 5 59 HEX5300664.1 STAS domain-containing protein [Streptosporangiaceae bacterium] diamond 165 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
27957105 27957105 PRJNA1214993_P_NODE_20085_length_252_cov_0.871508_g19899_i0 PRJNA1214993 20085 252 0.871508 2.19620016 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 73.9 4.09e-13   NR HET7653669.1 2201156 g19899 i0 73.3 0.535714285714286 45 12 53.6 0 3 137 437 481 HET7653669.1 non-homologous end-joining DNA ligase [Acidimicrobiales bacterium] diamond 135 73.9 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28051767 28051767 PRJNA1214993_P_NODE_24885_length_244_cov_0.912281_g24699_i0 PRJNA1214993 24885 244 0.912281 2.22596564 Corynebacterium casei 160386 Bacteria Bacteria 73.6 2.06e-13   NR WP_193025630.1 160386 g24699 i0 62 0.614754098360656 50 19 61.5 0 1 150 221 270 WP_193025630.1 ATP-grasp fold amidoligase family protein [Corynebacterium casei] diamond 150 73.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium casei
28177855 28177855 PRJNA1214993_P_NODE_7206_length_402_cov_1.313070_g7021_i0 PRJNA1214993 7206 402 1.31307 5.2785414 Actinomycetota bacterium 2900548 Bacteria Bacteria 57.4 1.39e-6   NR TMK82035.1 2900548 g7021 i0 35.4 1.8134328358209 79 48 59 2 238 2 37 112 TMK82035.1 MAG: PQQ-dependent sugar dehydrogenase [Actinomycetota bacterium] diamond 729 57.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28291491 28291491 PRJNA1214993_P_NODE_24746_length_244_cov_0.912281_g24560_i0 PRJNA1214993 24746 244 0.912281 2.22596564 FCB group 1783270 Bacteria Bacteria 94.4 1.09e-20   NR WP_296191886.1 191216 g24560 i0 68.8 6.66393442622951 77 24 94.7 0 14 244 227 303 WP_296191886.1 S8 family peptidase [uncultured Microbacterium sp.] diamond 1626 94.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium uncultured Microbacterium sp.
28620288 28620288 PRJNA1214993_P_NODE_24667_length_244_cov_0.912281_g24481_i0 PRJNA1214993 24667 244 0.912281 2.22596564 Actinomycetota bacterium 2900548 Bacteria Bacteria 42.4 0.0122   NR MDQ3637919.1 2900548 g24481 i0 36.5 0.774590163934426 63 39 76.2 1 12 197 20 82 MDQ3637919.1 HAD-IA family hydrolase [Actinomycetota bacterium] diamond 189 42.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28999383 28999383 PRJNA1214993_P_NODE_8508_length_373_cov_0.760000_g8322_i0 PRJNA1214993 8508 373 0.76 2.8348 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 44.3 0.0368   NR HEY7266730.1 1909295 g8322 i0 34.1 0.707774798927614 88 56 70 2 330 70 137 223 HEY7266730.1 MFS transporter [Solirubrobacterales bacterium] diamond 264 44.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
29207429 29207429 PRJNA1214993_P_NODE_25569_length_243_cov_0.905882_g25383_i0 PRJNA1214993 25569 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 113 4.22e-27   NR WP_035754883.1 98671 g25383 i0 63 6 81 30 100 0 1 243 328 408 WP_035754883.1 propionyl-CoA synthetase [Pseudoglutamicibacter albus] diamond 1458 114 0.991228070175439 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudoglutamicibacter Pseudoglutamicibacter albus
29302035 29302035 PRJNA1214993_P_NODE_5589_length_453_cov_1.792105_g5404_i0 PRJNA1214993 5589 453 1.792105 8.11823565 Bacteria 2 Bacteria Bacteria 153 5.559999999999998e-42   NR HEV3363407.1 2080302 g5404 i0 47.3 4.93377483443709 165 72 100 3 1 453 151 314 HEV3363407.1 PQQ-dependent sugar dehydrogenase [Acidimicrobiia bacterium] diamond 2235 153 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
29535764 29535764 PRJNA1214993_P_NODE_22890_length_247_cov_0.896552_g22704_i0 PRJNA1214993 22890 247 0.896552 2.21448344 Brachybacterium squillarum 661979 Bacteria Bacteria 42.7 0.0373   NR WP_264449446.1 661979 g22704 i0 50 0.48582995951417 40 20 48.6 0 125 6 170 209 WP_264449446.1 FAD-dependent oxidoreductase [Brachybacterium squillarum] diamond 120 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium squillarum
29724929 29724929 PRJNA1214993_P_NODE_23370_length_246_cov_1.682081_g23184_i0 PRJNA1214993 23370 246 1.682081 4.13791926 Lawsonella clevelandensis 1528099 Bacteria Bacteria 146 1.3899999999999999e-40   NR WP_303678713.1 1528099 g23184 i0 100 2 82 0 100 0 246 1 206 287 WP_303678713.1 potassium channel family protein [Lawsonella clevelandensis] diamond 492 146 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
30325979 30325979 PRJNA1214993_P_NODE_25852_length_242_cov_0.923077_g25666_i0 PRJNA1214993 25852 242 0.923077 2.23384634 Rhizocola hellebori 1392758 Bacteria Bacteria 68.2 4.07e-11   NR WP_203905964.1 1392758 g25666 i0 90 0.495867768595041 40 4 49.6 0 124 5 1 40 WP_203905964.1 AfsR/SARP family transcriptional regulator [Rhizocola hellebori] diamond 120 68.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Rhizocola Rhizocola hellebori
30344810 30344810 PRJNA1214993_P_NODE_13952_length_295_cov_2.081081_g13766_i0 PRJNA1214993 13952 295 2.081081 6.13918895 Actinomycetes 1760 Bacteria Bacteria 60.8 2.29e-9   NR WP_019873749.1 35751 g13766 i0 40 1.82033898305085 95 52 96.6 3 291 7 11 100 WP_019873749.1 DUF4267 domain-containing protein [Sporichthya polymorpha] diamond 537 60.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Sporichthyales Sporichthyaceae Sporichthya Sporichthya polymorpha
30767788 30767788 PRJNA1214993_P_NODE_24154_length_245_cov_0.906977_g23968_i0 PRJNA1214993 24154 245 0.906977 2.22209365 Streptomyces noursei 1971 Bacteria Bacteria 77 3.26e-14   NR WP_064071412.1 1971 g23968 i0 55.8 3.80816326530612 77 34 94.3 0 14 244 354 430 WP_064071412.1 non-ribosomal peptide synthetase [Streptomyces noursei] diamond 933 77 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces noursei
30894308 30894308 PRJNA1214993_P_NODE_25854_length_242_cov_0.923077_g25668_i0 PRJNA1214993 25854 242 0.923077 2.23384634 uncultured Nocardioides sp. 198441 Bacteria Bacteria 97.4 1.49e-21   NR WP_299051794.1 198441 g25668 i0 67.1 2.81404958677686 73 24 90.5 0 2 220 137 209 WP_299051794.1 recombinase family protein [uncultured Nocardioides sp.] diamond 681 97.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides uncultured Nocardioides sp.
30913118 30913118 PRJNA1214993_P_NODE_23754_length_246_cov_0.890173_g23568_i0 PRJNA1214993 23754 246 0.890173 2.18982558 Actinomycetes 1760 Bacteria Bacteria 53.1 1.29e-6   NR WP_019873749.1 35751 g23568 i0 39.7 2.67073170731707 73 39 89 2 219 1 13 80 WP_019873749.1 DUF4267 domain-containing protein [Sporichthya polymorpha] diamond 657 53.5 0.992523364485981 Bacteria   Bacillati Actinomycetota Actinomycetes Sporichthyales Sporichthyaceae Sporichthya Sporichthya polymorpha
30957510 30957510 PRJNA1214993_P_NODE_19454_length_254_cov_1.276243_g19268_i0 PRJNA1214993 19454 254 1.276243 3.24165722 Actinobacteria bacterium SCGC AG-212-D 2900548 Bacteria Bacteria 84.7 7.13e-17   NR OAI38568.1 1799652 g19268 i0 55.4 0.980314960629921 83 36 96.9 1 7 252 217 299 OAI38568.1 hypothetical protein AYO39_03605, partial [Actinobacteria bacterium SCGC AG-212-D09] diamond 249 84.7 1 Bacteria   Bacillati Actinomycetota         Actinobacteria bacterium SCGC AG-212-D09
31052400 31052400 PRJNA1214993_P_NODE_25675_length_243_cov_0.905882_g25489_i0 PRJNA1214993 25675 243 0.905882 2.20129326 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 58.2 1.41e-7   NR MBV9310452.1 1909295 g25489 i0 44.2 1.59259259259259 77 42 93.8 1 16 243 234 310 MBV9310452.1 hypothetical protein [Solirubrobacterales bacterium] diamond 387 58.2 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
31241567 31241567 PRJNA1214993_P_NODE_12495_length_312_cov_1.711297_g12309_i0 PRJNA1214993 12495 312 1.711297 5.33924664 Actinomycetota bacterium 2900548 Bacteria Bacteria 68.6 1.7e-11   NR HEY1126632.1 2900548 g12309 i0 39.8 1.08653846153846 113 51 97.1 5 312 10 92 199 HEY1126632.1 PQQ-dependent sugar dehydrogenase [Actinomycetota bacterium] diamond 339 68.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31734830 31734830 PRJNA1214993_P_NODE_21597_length_249_cov_1.363636_g21411_i0 PRJNA1214993 21597 249 1.363636 3.39545364 Actinomycetes 1760 Bacteria Bacteria 53.9 4.66e-6   NR WP_153407645.1 2585198 g21411 i0 38.4 4.28915662650602 73 42 84.3 1 33 242 1251 1323 WP_153407645.1 type VII secretion protein EccCb [Nocardia macrotermitis] diamond 1068 53.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia macrotermitis
31811092 31811092 PRJNA1214993_P_NODE_25657_length_243_cov_0.905882_g25471_i0 PRJNA1214993 25657 243 0.905882 2.20129326 Streptomyces sp. NPDC 1931 Bacteria Bacteria 43.5 0.0143   NR WP_385709974.1 3346891 g25471 i0 50 0.617283950617284 50 24 60.5 1 86 232 42 91 WP_385709974.1 TetR/AcrR family transcriptional regulator [Streptomyces sp. NPDC059639] diamond 150 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC059639
31988017 31988017 PRJNA1214993_P_NODE_10478_length_339_cov_0.879699_g10292_i0 PRJNA1214993 10478 339 0.879699 2.98217961 root 1 Root_unresolved Root_unresolved 45.1 0.0137   NR WP_104343576.1 28447 g10292 i0 40.3 4.06194690265487 67 39 59.3 1 36 236 178 243 WP_104343576.1 hemerythrin domain-containing protein [Clavibacter michiganensis] diamond 1377 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis
32000899 32000899 PRJNA1214993_P_NODE_6698_length_416_cov_1.411079_g6513_i0 PRJNA1214993 6698 416 1.411079 5.87008864 Herbiconiux oxytropis 2970915 Bacteria Bacteria 85.1 3.83e-16   NR WP_259526675.1 2970915 g6513 i0 41.7 0.865384615384615 120 48 74.3 3 379 71 463 577 WP_259526675.1 choice-of-anchor I family protein [Herbiconiux oxytropis] diamond 360 85.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Herbiconiux Herbiconiux oxytropis
32095752 32095752 PRJNA1214993_P_NODE_17098_length_271_cov_1.181818_g16912_i0 PRJNA1214993 17098 271 1.181818 3.20272678 Corynebacterium halotolerans 225326 Bacteria Bacteria 50.4 7.87e-5   NR WP_015400109.1 225326 g16912 i0 44.6 0.719557195571956 65 35 72 1 269 75 142 205 WP_015400109.1 hypothetical protein [Corynebacterium halotolerans] diamond 195 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium halotolerans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;