RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1214993" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 1 ✖

bioproject 1

  • PRJNA1214993 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30028453 30028453 PRJNA1214993_P_NODE_23691_length_246_cov_0.901734_g23505_i0 PRJNA1214993 23691 246 0.901734 2.21826564 root 1 Root_unresolved Root_unresolved 50.8 5.3e-5   NR MDP6200300.1 2666344 g23505 i0 64.7 4.03658536585366 34 12 41.5 0 155 54 474 507 MDP6200300.1 putative Ig domain-containing protein [Poseidonia sp.] diamond 993 51.2 0.9921875 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Poseidoniaceae Candidatus Poseidonia Poseidonia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;