RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1204310" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1204310 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28146652 28146652 PRJNA1204310_P_NODE_47185_length_267_cov_1.273196_g46888_i0 PRJNA1204310 47185 267 1.273196 3.39943332 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 43.1 0.0376   NR MBE0570665.1 2651163 g46888 i0 33.3 0.876404494382023 78 42 83.1 4 37 258 503 574 MBE0570665.1 T9SS type A sorting domain-containing protein [Ignavibacteriaceae bacterium] diamond 234 43.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
29472300 29472300 PRJNA1204310_P_NODE_60110_length_244_cov_1.368421_g59813_i0 PRJNA1204310 60110 244 1.368421 3.33894724 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 65.5 2.32e-10   NR MDR3668602.1 2651163 g59813 i0 50.8 0.725409836065574 59 29 72.5 0 3 179 230 288 MDR3668602.1 histidine kinase dimerization/phospho-acceptor domain-containing protein [Ignavibacteriaceae bacterium] diamond 177 65.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
29902044 29902044 PRJNA1204310_P_NODE_56771_length_248_cov_0.891429_g56474_i0 PRJNA1204310 56771 248 0.891429 2.21074392 root 1 Root_unresolved Root_unresolved 46.6 0.00168   NR MBE2227544.1 2053306 g56474 i0 42.2 1.54838709677419 64 33 72.6 1 208 29 70 133 MBE2227544.1 T9SS type A sorting domain-containing protein [Ignavibacteria bacterium] diamond 384 47 0.991489361702128 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30483387 30483387 PRJNA1204310_P_NODE_25413_length_365_cov_1.517123_g25116_i0 PRJNA1204310 25413 365 1.517123 5.53749895 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 122 1.3e-29   NR HKI77849.1 2651163 g25116 i0 56.7 4.8 97 42 79.7 0 293 3 8 104 HKI77849.1 L-glutamate gamma-semialdehyde dehydrogenase [Ignavibacteriaceae bacterium] diamond 1752 122 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
30989006 30989006 PRJNA1204310_P_NODE_43434_length_281_cov_1.471154_g43137_i0 PRJNA1204310 43434 281 1.471154 4.13394274 Ignavibacteriae bacterium HGW-Ignavibacteriae-4 2013811 Bacteria Bacteria 75.5 1.84e-13   NR PKL79541.1 2013811 g43137 i0 43.4 2.64768683274021 83 40 88.6 2 13 261 1085 1160 PKL79541.1 MAG: hypothetical protein CVV25_07710 [Ignavibacteriae bacterium HGW-Ignavibacteriae-4] diamond 744 75.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriae bacterium HGW-Ignavibacteriae-4
31874196 31874196 PRJNA1204310_P_NODE_22677_length_383_cov_1.509677_g22380_i0 PRJNA1204310 22677 383 1.509677 5.78206291 Ignavibacteria bacterium 2053306 Bacteria Bacteria 57 1.8e-6   NR HEX2788371.1 2053306 g22380 i0 30.7 2.68668407310705 114 78 89.3 1 29 370 7 119 HEX2788371.1 tetratricopeptide repeat protein [Ignavibacteria bacterium] diamond 1029 57 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;