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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA1200128" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1200128 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6704824 6704824 PRJNA1200128_S_NODE_24166_length_192_cov_1.261745_g24057_i0 PRJNA1200128 24166 192 1.261745 2.4225504 Bacteroidales 171549 Bacteria Bacteria 125 1.2099999999999999e-31   NR WP_053826498.1 1627894 g24057 i0 96.9 11 64 2 100 0 192 1 453 516 WP_053826498.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Lascolabacillus massiliensis] diamond 2112 125 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Lascolabacillus Lascolabacillus massiliensis
11248039 11248039 PRJNA1200128_S_NODE_41189_length_160_cov_1.606838_g41080_i0 PRJNA1200128 41189 160 1.606838 2.5709408 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 90.1 2.25e-19   NR MEO6916100.1 1869212 g41080 i0 96.2 0.975 52 2 97.5 0 158 3 18 69 MEO6916100.1 gliding motility protein GldM [Chitinophagaceae bacterium] diamond 156 90.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
11805586 11805586 PRJNA1200128_S_NODE_19850_length_204_cov_2.043478_g19741_i0 PRJNA1200128 19850 204 2.043478 4.16869512 Riemerella sp. 2382126 Bacteria Bacteria 119 8.57e-30   NR RKW61444.1 2382126 g19741 i0 97 2.95588235294118 67 2 98.5 0 202 2 61 127 RKW61444.1 MAG: DUF2723 domain-containing protein, partial [Riemerella sp.] diamond 603 119 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella sp.
26723923 26723923 PRJNA1200128_S_NODE_38321_length_164_cov_1.942149_g38212_i0 PRJNA1200128 38321 164 1.942149 3.18512436 Prevotella sp. B2-R-1 59823 Bacteria Bacteria 80.5 3.47e-17   NR WP_276506002.1 3035284 g38212 i0 100 1.39024390243902 38 0 69.5 0 51 164 1 38 WP_276506002.1 RNA polymerase sigma factor [Prevotella sp. B2-R-102] diamond 228 80.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella intestinalis
26851298 26851298 PRJNA1200128_S_NODE_37321_length_166_cov_1.146341_g37212_i0 PRJNA1200128 37321 166 1.146341 1.90292606 Bacteroidales bacterium 2030927 Bacteria Bacteria 93.6 3.2500000000000003e-21   NR HHX31480.1 2030927 g37212 i0 75.9 0.975903614457831 54 13 97.6 0 166 5 160 213 HHX31480.1 pirin family protein [Bacteroidales bacterium] diamond 162 93.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
27357209 27357209 PRJNA1200128_S_NODE_20223_length_203_cov_1.468750_g20114_i0 PRJNA1200128 20223 203 1.46875 2.9815625 Bacteroidales bacterium 2030927 Bacteria Bacteria 44.7 0.00461   NR MBR5862884.1 2030927 g20114 i0 38.6 0.650246305418719 44 27 65 0 182 51 249 292 MBR5862884.1 TonB-dependent receptor [Bacteroidales bacterium] diamond 132 44.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
27483389 27483389 PRJNA1200128_S_NODE_6663_length_287_cov_1.926230_g6554_i0 PRJNA1200128 6663 287 1.92623 5.5282801 Candidatus Cacconaster equi 3083051 Bacteria Bacteria 43.9 0.024   NR MBQ0123976.1 3083051 g6554 i0 30.9 1.01393728222997 97 61 97.2 3 286 8 96 190 MBQ0123976.1 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Candidatus Cacconaster equi] diamond 291 43.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales   Candidatus Cacconaster Candidatus Cacconaster equi
28209409 28209409 PRJNA1200128_S_NODE_31306_length_176_cov_1.654135_g31197_i0 PRJNA1200128 31306 176 1.654135 2.9112776 Saprospiraceae bacterium 2202734 Bacteria Bacteria 42.4 0.0196   NR HMU05056.1 2202734 g31197 i0 32.7 1.875 55 36 93.8 1 3 167 47 100 HMU05056.1 T9SS type A sorting domain-containing protein [Saprospiraceae bacterium] diamond 330 42.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae   Saprospiraceae bacterium
28272530 28272530 PRJNA1200128_S_NODE_43666_length_157_cov_1.236842_g43557_i0 PRJNA1200128 43666 157 1.236842 1.94184194 Prevotella sp. 59823 Bacteria Bacteria 43.9 4.12e-4   NR MCI5506098.1 59823 g43557 i0 65.7 0.668789808917197 35 12 66.9 0 154 50 19 53 MCI5506098.1 hypothetical protein [Prevotella sp.] diamond 105 43.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
28304271 28304271 PRJNA1200128_S_NODE_47766_length_152_cov_1.293578_g47657_i0 PRJNA1200128 47766 152 1.293578 1.96623856 Prevotella sp. tc2-28 1761888 Bacteria Bacteria 89 5.49e-19   NR WP_091961826.1 1761888 g47657 i0 94 0.986842105263158 50 3 98.7 0 151 2 286 335 WP_091961826.1 sensor histidine kinase [Prevotella sp. tc2-28] diamond 150 89 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. tc2-28
28386287 28386287 PRJNA1200128_S_NODE_41106_length_160_cov_2.008547_g40997_i0 PRJNA1200128 41106 160 2.008547 3.2136752 Algoriphagus 246875 Bacteria Bacteria 42.4 0.0169   NR WP_135072724.1 2562278 g40997 i0 43.6 2.23125 39 22 73.1 0 22 138 438 476 WP_135072724.1 POTRA domain-containing protein [Algoriphagus kandeliae] diamond 357 42.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus kandeliae
28557026 28557026 PRJNA1200128_S_NODE_18967_length_207_cov_1.146341_g18858_i0 PRJNA1200128 18967 207 1.146341 2.37292587 Cecembia rubra 1485585 Bacteria Bacteria 135 9.61e-39   NR WP_106565598.1 1485585 g18858 i0 100 0.985507246376812 68 0 98.6 0 205 2 71 138 WP_106565598.1 HEAT repeat domain-containing protein [Cecembia rubra] diamond 204 135 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia rubra
28746328 28746328 PRJNA1200128_S_NODE_29707_length_179_cov_2.073529_g29598_i0 PRJNA1200128 29707 179 2.073529 3.71161691 Paludibacteraceae bacterium 2748031 Bacteria Bacteria 118 3.0000000000000003e-31   NR MBO7441721.1 2748031 g29598 i0 100 0.988826815642458 59 0 98.9 0 179 3 169 227 MBO7441721.1 EamA family transporter [Paludibacteraceae bacterium] diamond 177 118 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae   Paludibacteraceae bacterium
28872545 28872545 PRJNA1200128_S_NODE_39968_length_162_cov_1.184874_g39859_i0 PRJNA1200128 39968 162 1.184874 1.91949588 Prevotella sp. tc2-28 1761888 Bacteria Bacteria 95.5 3.08e-21   NR WP_091961826.1 1761888 g39859 i0 98.1 0.981481481481482 53 1 98.1 0 161 3 331 383 WP_091961826.1 sensor histidine kinase [Prevotella sp. tc2-28] diamond 159 95.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. tc2-28
29062218 29062218 PRJNA1200128_S_NODE_22208_length_197_cov_2.759740_g22099_i0 PRJNA1200128 22208 197 2.75974 5.4366878 Bacteroidota bacterium 1898104 Bacteria Bacteria 43.5 0.0105   NR MEL6538846.1 1898104 g22099 i0 33.3 0.913705583756345 60 36 86.8 2 9 179 66 124 MEL6538846.1 DUF6734 family protein [Bacteroidota bacterium] diamond 180 43.5 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29238917 29238917 PRJNA1200128_S_NODE_39129_length_163_cov_1.566667_g39020_i0 PRJNA1200128 39129 163 1.566667 2.55366721 Prevotella 838 Bacteria Bacteria 101 2.2699999999999994e-23   NR MCI7509856.1 59823 g39020 i0 88.9 6.88343558282209 54 6 99.4 0 1 162 373 426 MCI7509856.1 DNA polymerase I [Prevotella sp.] diamond 1122 102 0.990196078431373 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
29630032 29630032 PRJNA1200128_S_NODE_42630_length_158_cov_1.860870_g42521_i0 PRJNA1200128 42630 158 1.86087 2.9401746 Porphyromonadaceae bacterium 2049046 Bacteria Bacteria 107 1.02e-25   NR HBT84837.1 2049046 g42521 i0 98.1 0.987341772151899 52 1 98.7 0 3 158 331 382 HBT84837.1 hypothetical protein [Porphyromonadaceae bacterium] diamond 156 107 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae   Porphyromonadaceae bacterium
29977732 29977732 PRJNA1200128_S_NODE_40671_length_161_cov_1.194915_g40562_i0 PRJNA1200128 40671 161 1.194915 1.92381315 Bacteroidota bacterium 1898104 Bacteria Bacteria 107 3.8500000000000006e-27   NR NLN24804.1 1898104 g40562 i0 90.2 0.950310559006211 51 5 95 0 161 9 203 253 NLN24804.1 hypothetical protein [Bacteroidota bacterium] diamond 153 107 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
30767701 30767701 PRJNA1200128_S_NODE_40554_length_161_cov_1.305085_g40445_i0 PRJNA1200128 40554 161 1.305085 2.10118685 Paraprevotella sp. 2049036 Bacteria Bacteria 64.7 2.02e-10   NR MCI6371965.1 2049036 g40445 i0 62.5 0.894409937888199 48 9 72.7 1 118 2 2 49 MCI6371965.1 sel1 repeat family protein [Paraprevotella sp.] diamond 144 64.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella sp.
30767702 30767702 PRJNA1200128_S_NODE_6254_length_293_cov_1.296000_g6145_i0 PRJNA1200128 6254 293 1.296 3.79728 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 44.7 0.0125   NR HEX2629857.1 1869212 g6145 i0 42.6 0.48122866894198 47 25 48.1 1 250 110 126 170 HEX2629857.1 glycosyltransferase [Chitinophagaceae bacterium] diamond 141 44.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
30830829 30830829 PRJNA1200128_S_NODE_33594_length_172_cov_1.457364_g33485_i0 PRJNA1200128 33594 172 1.457364 2.50666608 Prevotella sp. 59823 Bacteria Bacteria 104 7.72e-25   NR MBR6606504.1 59823 g33485 i0 91.2 0.994186046511628 57 5 99.4 0 1 171 4 60 MBR6606504.1 LL-diaminopimelate aminotransferase [Prevotella sp.] diamond 171 104 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
30976251 30976251 PRJNA1200128_S_NODE_30134_length_178_cov_2.770370_g30025_i0 PRJNA1200128 30134 178 2.7703700000000002 4.9312586 Bacteria 2 Bacteria Bacteria 42.4 0.0158   NR MES2762527.1 1898104 g30025 i0 34.5 3.33707865168539 55 35 92.7 1 170 6 9 62 MES2762527.1 hypothetical protein [Bacteroidota bacterium] diamond 594 42.4 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
31178144 31178144 PRJNA1200128_S_NODE_23075_length_195_cov_1.236842_g22966_i0 PRJNA1200128 23075 195 1.236842 2.4118419 Muribaculaceae bacterium 2498093 Bacteria Bacteria 116 8.21e-29   NR MDE6310789.1 2498093 g22966 i0 85.9 0.984615384615385 64 9 98.5 0 194 3 4 67 MDE6310789.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Muribaculaceae bacterium] diamond 192 116 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae   Muribaculaceae bacterium
31368402 31368402 PRJNA1200128_S_NODE_12936_length_233_cov_1.236842_g12827_i0 PRJNA1200128 12936 233 1.236842 2.88184186 Cecembia lonarensis 645110 Bacteria Bacteria 103 2.98e-26   NR WP_083847960.1 645110 g12827 i0 89.7 0.746781115879828 58 6 74.7 0 60 233 1 58 WP_083847960.1 nuclear transport factor 2 family protein [Cecembia lonarensis] diamond 174 103 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia lonarensis
31494818 31494818 PRJNA1200128_S_NODE_18216_length_209_cov_4.156627_g18107_i0 PRJNA1200128 18216 209 4.156627 8.68735043 Prevotella sp. 59823 Bacteria Bacteria 107 2.55e-25   NR MBE6258626.1 59823 g18107 i0 96.3 0.77511961722488 54 2 77.5 0 47 208 400 453 MBE6258626.1 N-acetylmuramoyl-L-alanine amidase [Prevotella sp.] diamond 162 107 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
31526440 31526440 PRJNA1200128_S_NODE_16856_length_214_cov_3.514620_g16747_i0 PRJNA1200128 16856 214 3.51462 7.5212868 Paludibacteraceae bacterium 2748031 Bacteria Bacteria 123 3e-32   NR MBR6829465.1 2748031 g16747 i0 84.3 3.92523364485981 70 11 98.1 0 3 212 228 297 MBR6829465.1 transcription antitermination factor NusB [Paludibacteraceae bacterium] diamond 840 123 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae   Paludibacteraceae bacterium
31716082 31716082 PRJNA1200128_S_NODE_22357_length_197_cov_1.220779_g22248_i0 PRJNA1200128 22357 197 1.220779 2.40493463 Prevotella sp. 59823 Bacteria Bacteria 132 5.3000000000000005e-34   NR MDY3847363.1 59823 g22248 i0 87.7 0.989847715736041 65 8 99 0 197 3 676 740 MDY3847363.1 BamA/TamA family outer membrane protein [Prevotella sp.] diamond 195 132 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
31874184 31874184 PRJNA1200128_S_NODE_45217_length_155_cov_1.357143_g45108_i0 PRJNA1200128 45217 155 1.357143 2.10357165 Dysgonamonadaceae bacterium 2065189 Bacteria Bacteria 97.1 3.48e-22   NR HKM45130.1 2065189 g45108 i0 84.3 2.96129032258065 51 8 98.7 0 154 2 1 51 HKM45130.1 putative PEP-binding protein [Dysgonamonadaceae bacterium] diamond 459 97.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae   Dysgonamonadaceae bacterium
31969090 31969090 PRJNA1200128_S_NODE_9738_length_254_cov_16.706161_g9629_i0 PRJNA1200128 9738 254 16.706161 42.43364894 Aureitalea sp. L 1872661 Bacteria Bacteria 45.8 0.0035   NR WP_265198814.1 2816962 g9629 i0 30.8 0.921259842519685 78 54 92.1 0 9 242 226 303 WP_265198814.1 hybrid sensor histidine kinase/response regulator [Aureitalea sp. L0-47] diamond 234 45.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aureitalea Aureitalea sp. L0-47
32380595 32380595 PRJNA1200128_S_NODE_49679_length_150_cov_1.775701_g49570_i0 PRJNA1200128 49679 150 1.775701 2.6635515 Aureispira sp. CCB-QB1 1313421 Bacteria Bacteria 41.6 0.0277   NR WP_052598205.1 1313421 g49570 i0 42.1 0.76 38 22 76 0 31 144 135 172 WP_052598205.1 hypothetical protein [Aureispira sp. CCB-QB1] diamond 114 41.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae Aureispira Aureispira sp. CCB-QB1
32475605 32475605 PRJNA1200128_S_NODE_19539_length_205_cov_1.574074_g19430_i0 PRJNA1200128 19539 205 1.574074 3.2268517 Cecembia lonarensis 645110 Bacteria Bacteria 138 2.09e-37   NR WP_009183914.1 645110 g19430 i0 92.6 0.995121951219512 68 5 99.5 0 2 205 229 296 WP_009183914.1 MFS transporter [Cecembia lonarensis] diamond 204 138 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia lonarensis
32538919 32538919 PRJNA1200128_S_NODE_5879_length_299_cov_1.652344_g5770_i0 PRJNA1200128 5879 299 1.652344 4.94050856 Bacteroidaceae bacterium 2212467 Bacteria Bacteria 191 3.260000000000001e-59   NR MBQ3130834.1 2212467 g5770 i0 95.9 0.973244147157191 97 4 97.3 0 298 8 130 226 MBQ3130834.1 hypothetical protein [Bacteroidaceae bacterium] diamond 291 191 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae   Bacteroidaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;