RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1200128" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1200128 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29081033 29081033 PRJNA1200128_S_NODE_43408_length_157_cov_1.649123_g43299_i0 PRJNA1200128 43408 157 1.649123 2.58912311 Deinococcus 1298 Bacteria Bacteria 55.1 1.98e-7   NR MDB5045782.1 47478 g43299 i0 75.9 1.66242038216561 29 7 55.4 0 156 70 150 178 MDB5045782.1 hydrolase [Deinococcus sp.] diamond 261 55.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
29851565 29851565 PRJNA1200128_S_NODE_15111_length_222_cov_0.759777_g15002_i0 PRJNA1200128 15111 222 0.759777 1.68670494 Oceanithermus profundus 187137 Bacteria Bacteria 44.3 0.00798   NR HGY10598.1 187137 g15002 i0 40.5 0.567567567567568 42 25 56.8 0 60 185 19 60 HGY10598.1 right-handed parallel beta-helix repeat-containing protein [Oceanithermus profundus] diamond 126 44.3 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Oceanithermus Oceanithermus profundus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;