RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1199893" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199893 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30388953 30388953 PRJNA1199893_P_NODE_15713_length_246_cov_1.086705_g15638_i0 PRJNA1199893 15713 246 1.086705 2.6732943 Lactiplantibacillus plantarum 1590 Bacteria Bacteria 47 1.65e-4   NR WP_252130143.1 1590 g15638 i0 87.5 1.75609756097561 24 3 29.3 0 3 74 66 89 WP_252130143.1 hypothetical protein, partial [Lactiplantibacillus plantarum] diamond 432 47 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum
30957430 30957430 PRJNA1199893_P_NODE_12014_length_276_cov_1.423645_g11939_i0 PRJNA1199893 12014 276 1.423645 3.9292602 Streptococcus pyogenes 1314 Bacteria Bacteria 49.7 1.72e-4   NR WP_317582632.1 1314 g11939 i0 54.4 0.619565217391304 57 24 59.8 2 74 238 27 83 WP_317582632.1 hypothetical protein, partial [Streptococcus pyogenes] diamond 171 49.7 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;