RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1199330 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17622337 17622337 PRJNA1199330_P_NODE_93954_length_259_cov_2.279570_g93255_i0 PRJNA1199330 93954 259 2.27957 5.9040863 root 1 Root_unresolved Root_unresolved 65.1 3.2e-11   NR KRY02015.1 6337 g93255 i0 66.7 8.97683397683398 48 15 55.6 1 9 152 71 117 KRY02015.1 Glutathione peroxidase, partial [Trichinella pseudospiralis] diamond 2325 65.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
27293787 27293787 PRJNA1199330_P_NODE_25863_length_404_cov_3.731118_g25167_i0 PRJNA1199330 25863 404 3.731118 15.07371672 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 45.8 0.00369   NR CAD5209027.1 6326 g25167 i0 44.4 0.334158415841584 45 24 33.4 1 395 261 56 99 CAD5209027.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 135 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
27660276 27660276 PRJNA1199330_P_NODE_75724_length_276_cov_3.014778_g75025_i0 PRJNA1199330 75724 276 3.014778 8.32078728 Rhabditida 6236 Nematoda Nematoda 43.1 0.0336   NR KIH56863.1 51022 g75025 i0 48.8 0.880434782608696 41 21 44.6 0 121 243 135 175 KIH56863.1 tetratricopeptide repeat protein, partial [Ancylostoma duodenale] diamond 243 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
28146597 28146597 PRJNA1199330_P_NODE_41445_length_320_cov_2.186235_g40746_i0 PRJNA1199330 41445 320 2.186235 6.995952 Mesorhabditis spiculigera 96644 Nematoda Nematoda 49.3 4.06e-4   NR CAJ0573541.1 96644 g40746 i0 39.5 0.80625 43 26 40.3 0 314 186 26 68 CAJ0573541.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 258 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
28418113 28418113 PRJNA1199330_P_NODE_56266_length_294_cov_1.959276_g55567_i0 PRJNA1199330 56266 294 1.959276 5.76027144 Strongylidae 27830 Nematoda Nematoda 74.3 1.45e-13   NR VDM70366.1 40348 g55567 i0 42.2 2.56122448979592 83 41 79.6 3 286 53 123 203 VDM70366.1 unnamed protein product, partial [Strongylus vulgaris] diamond 753 74.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
31937354 31937354 PRJNA1199330_P_NODE_69197_length_282_cov_2.641148_g68498_i0 PRJNA1199330 69197 282 2.641148 7.44803736 Auanema sp. JU1783 2878363 Nematoda Nematoda 43.1 0.0417   NR CAI4232656.1 2878363 g68498 i0 36.2 0.617021276595745 58 37 61.7 0 280 107 407 464 CAI4232656.1 unnamed protein product [Auanema sp. JU1783] diamond 174 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
32746594 32746594 PRJNA1199330_P_NODE_41820_length_318_cov_3.457143_g41121_i0 PRJNA1199330 41820 318 3.457143 10.99371474 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.5 0.0229   NR EJW88476.1 6293 g41121 i0 39.6 1 48 29 45.3 0 11 154 9 56 EJW88476.1 calcyphosin [Wuchereria bancrofti] diamond 318 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;