RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199330 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1599865 1599865 PRJNA1199330_P_NODE_15562_length_519_cov_1.204036_g14873_i0 PRJNA1199330 15562 519 1.204036 6.24894684 Mycoplasma mycoides 2102 Bacteria Bacteria 80.9 1.41e-14   NR WP_265494505.1 2102 g14873 i0 57.6 0.341040462427746 59 25 34.1 0 180 4 1 59 WP_265494505.1 methionyl-tRNA formyltransferase [Mycoplasma mycoides] diamond 177 80.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
18895397 18895397 PRJNA1199330_P_NODE_113555_length_244_cov_0.912281_g112856_i0 PRJNA1199330 113555 244 0.912281 2.22596564 Entomoplasmatales 186328 Bacteria Bacteria 89.4 4.35e-19   NR WP_004027622.1 2134 g112856 i0 51.9 1.99180327868852 81 39 99.6 0 244 2 128 208 WP_004027622.1 L-lactate dehydrogenase [Spiroplasma melliferum] diamond 486 89.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma melliferum
29314656 29314656 PRJNA1199330_P_NODE_31509_length_368_cov_4.613559_g30813_i0 PRJNA1199330 31509 368 4.613559 16.97789712 Malacoplasma sp. 2791014 Bacteria Bacteria 60.1 7.83e-8   NR MDE6562838.1 2791014 g30813 i0 52.9 1.10869565217391 68 32 55.4 0 204 1 44 111 MDE6562838.1 DUF5385 domain-containing protein [Malacoplasma sp.] diamond 408 60.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma sp.
30988940 30988940 PRJNA1199330_P_NODE_47814_length_311_cov_1.626050_g47115_i0 PRJNA1199330 47814 311 1.62605 5.0570155 Malacoplasma sp. 2791014 Bacteria Bacteria 62 1.28e-8   NR MDE7112483.1 2791014 g47115 i0 54.4 1.31189710610932 68 30 64.6 1 222 22 300 367 MDE7112483.1 DEAD/DEAH box helicase [Malacoplasma sp.] diamond 408 62 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;