RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1199330 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30262393 30262393 PRJNA1199330_P_NODE_71112_length_281_cov_1.201923_g70413_i0 PRJNA1199330 71112 281 1.201923 3.37740363 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0124   NR HEY7394443.1 2026741 g70413 i0 38 1.06761565836299 50 31 53.4 0 168 19 4 53 HEY7394443.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 300 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31336379 31336379 PRJNA1199330_P_NODE_98516_length_254_cov_3.187845_g97817_i0 PRJNA1199330 98516 254 3.187845 8.0971263 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 81.3 6.04e-16   NR MBT4977971.1 2026742 g97817 i0 57.8 0.755905511811024 64 26 74.4 1 24 212 9 72 MBT4977971.1 exo-alpha-sialidase [Gemmatimonadota bacterium] diamond 192 81.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32853587 32853587 PRJNA1199330_P_NODE_27260_length_394_cov_2.909657_g26564_i0 PRJNA1199330 27260 394 2.909657 11.46404858 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.0473   NR MCL4864760.1 2448054 g26564 i0 28.6 0.692893401015228 91 63 69.3 1 308 36 79 167 MCL4864760.1 HAMP domain-containing histidine kinase [Gemmatimonadales bacterium] diamond 273 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;