RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1199330 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30565022 30565022 PRJNA1199330_P_NODE_103073_length_251_cov_1.719101_g102374_i0 PRJNA1199330 103073 251 1.719101 4.31494351 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 77 1.65e-14   NR XP_004335961.1 1257118 g102374 i0 44.4 1.81673306772908 72 40 86.1 0 36 251 28 99 XP_004335961.1 endonuclease [Acanthamoeba castellanii str. Neff] diamond 456 77 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31368395 31368395 PRJNA1199330_P_NODE_92756_length_260_cov_2.850267_g92057_i0 PRJNA1199330 92756 260 2.850267 7.4106942 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.9 1.47e-9   NR XP_004367869.1 1257118 g92057 i0 51.4 0.807692307692308 70 32 78.5 1 1 204 289 358 XP_004367869.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 210 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31874161 31874161 PRJNA1199330_P_NODE_58897_length_291_cov_2.715596_g58198_i0 PRJNA1199330 58897 291 2.715596 7.90238436 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 156 9.159999999999999e-43   NR XP_004358245.1 1257118 g58198 i0 74 1.97938144329897 96 24 97.9 1 287 3 107 202 XP_004358245.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 576 156 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;