RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1199330 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28209368 28209368 PRJNA1199330_P_NODE_111666_length_245_cov_1.813953_g110967_i0 PRJNA1199330 111666 245 1.813953 4.44418485 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.00164   NR KRX06068.1 266149 g110967 i0 35.6 2.11836734693878 73 41 82 1 22 222 367 439 KRX06068.1 Protein kinase-like domain [Pseudocohnilembus persalinus] diamond 519 46.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
28240935 28240935 PRJNA1199330_P_NODE_43186_length_313_cov_4.037500_g42487_i0 PRJNA1199330 43186 313 4.0375 12.637375 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 94.7 5.08e-20   NR CAG9319005.1 1481888 g42487 i0 40.4 4.7444089456869 99 59 94.9 0 17 313 4134 4232 CAG9319005.1 unnamed protein product [Blepharisma stoltei] diamond 1485 94.7 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
30754999 30754999 PRJNA1199330_P_NODE_108914_length_247_cov_1.620690_g108215_i0 PRJNA1199330 108914 247 1.62069 4.0031043 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 69.7 4.7e-12   NR CAD8044635.1 5886 g108215 i0 62.5 14.3441295546559 48 18 58.3 0 245 102 204 251 CAD8044635.1 unnamed protein product [Paramecium primaurelia] diamond 3543 69.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
30988917 30988917 PRJNA1199330_P_NODE_103974_length_250_cov_2.892655_g103275_i0 PRJNA1199330 103974 250 2.892655 7.2316375 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 82 7.5e-17   NR CAG9310460.1 1481888 g103275 i0 56.2 1.74 73 32 87.6 0 28 246 1 73 CAG9310460.1 unnamed protein product [Blepharisma stoltei] diamond 435 82 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
32063957 32063957 PRJNA1199330_P_NODE_45018_length_312_cov_3.133891_g44319_i0 PRJNA1199330 45018 312 3.133891 9.77773992 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 63.9 3.15e-9   NR XP_001033375.2 312017 g44319 i0 35.3 0.980769230769231 102 64 98.1 2 6 311 1 100 XP_001033375.2 EF hand protein [Tetrahymena thermophila SB210] diamond 306 63.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32589315 32589315 PRJNA1199330_P_NODE_84859_length_268_cov_1.600000_g84160_i0 PRJNA1199330 84859 268 1.6 4.288 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 41.2 0.0447   NR CAD8114656.1 5886 g84160 i0 61.5 0.582089552238806 26 10 29.1 0 268 191 1 26 CAD8114656.1 unnamed protein product [Paramecium primaurelia] diamond 156 41.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;