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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1199330 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26945881 26945881 PRJNA1199330_P_NODE_39342_length_329_cov_3.636719_g38643_i0 PRJNA1199330 39342 329 3.636719 11.96480551 Engystomops pustulosus 76066 Chordata Chordata 46.2 6.75e-4   NR KAG8536220.1 76066 g38643 i0 70.4 0.729483282674772 27 8 24.6 0 249 329 43 69 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 240 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
27103983 27103983 PRJNA1199330_P_NODE_101142_length_252_cov_2.413408_g100443_i0 PRJNA1199330 101142 252 2.413408 6.08178816 Polypterus senegalus 55291 Chordata Chordata 43.9 0.0153   NR KAG2457475.1 55291 g100443 i0 78.3 1.0952380952381 23 5 27.4 0 88 20 17 39 KAG2457475.1 TCB1 transposase, partial [Polypterus senegalus] diamond 276 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27103991 27103991 PRJNA1199330_P_NODE_20442_length_453_cov_1.589474_g19748_i0 PRJNA1199330 20442 453 1.589474 7.20031722 Scyliorhinus torazame 75743 Chordata Chordata 194 3.230000000000001e-59   NR GCB75411.1 75743 g19748 i0 58.4 31.5695364238411 149 62 98.7 0 448 2 86 234 GCB75411.1 hypothetical protein [Scyliorhinus torazame] diamond 14301 194 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus torazame
27420490 27420490 PRJNA1199330_P_NODE_70523_length_281_cov_2.096154_g69824_i0 PRJNA1199330 70523 281 2.096154 5.89019274 Zosterops borbonicus 364589 Chordata Chordata 76.6 2.53e-14   NR TRZ07114.1 364589 g69824 i0 73.9 0.491103202846975 46 11 48 1 137 3 214 259 TRZ07114.1 hypothetical protein HGM15179_019993 [Zosterops borbonicus] diamond 138 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus
28209366 28209366 PRJNA1199330_P_NODE_108866_length_247_cov_1.758621_g108167_i0 PRJNA1199330 108866 247 1.758621 4.34379387 Styela clava 7725 Chordata Chordata 50.4 6.15e-5   NR XP_039254237.1 7725 g108167 i0 35.6 1.7246963562753 73 44 86.2 2 217 5 28 99 XP_039254237.1 transmembrane protein 147-like [Styela clava] diamond 426 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
28354685 28354685 PRJNA1199330_P_NODE_82746_length_270_cov_1.583756_g82047_i0 PRJNA1199330 82746 270 1.583756 4.2761412 Chordata 7711 Chordata Chordata 117 6.59e-32   NR NP_001089777.1 8355 g82047 i0 98.3 25.8111111111111 58 1 64.4 0 1 174 51 108 NP_001089777.1 uncharacterized protein LOC734842 [Xenopus laevis] diamond 6969 117 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
28620173 28620173 PRJNA1199330_P_NODE_45487_length_312_cov_2.966527_g44788_i0 PRJNA1199330 45487 312 2.966527 9.25556424 Caretta caretta 8467 Chordata Chordata 64.3 1.77e-10   NR CAM4564118.1 8467 g44788 i0 54.4 1.66346153846154 57 26 54.8 0 129 299 55 111 CAM4564118.1 unnamed protein product [Caretta caretta] diamond 519 64.3 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
28683321 28683321 PRJNA1199330_P_NODE_35867_length_345_cov_4.077206_g35168_i0 PRJNA1199330 35867 345 4.077206 14.0663607 Bombina bombina 8345 Chordata Chordata 76.3 2.37e-14   NR XP_053576036.1 8345 g35168 i0 44.2 2.51304347826087 95 42 82.6 2 287 3 13 96 XP_053576036.1 tRNA 2'-phosphotransferase 1 isoform X2 [Bombina bombina] diamond 867 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
28872530 28872530 PRJNA1199330_P_NODE_87168_length_266_cov_1.455959_g86469_i0 PRJNA1199330 87168 266 1.455959 3.87285094 Balaenoptera acutorostrata 9767 Chordata Chordata 82 7.1e-16   NR XP_057400032.1 9767 g86469 i0 67.9 0.631578947368421 56 18 63.2 0 266 99 258 313 XP_057400032.1 L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Balaenoptera acutorostrata] diamond 168 82 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera acutorostrata
29018118 29018118 PRJNA1199330_P_NODE_29488_length_380_cov_2.944625_g28792_i0 PRJNA1199330 29488 380 2.944625 11.189575 Hexanchiformes 30495 Chordata Chordata 59.3 2.81e-7   NR XP_070726670.1 55135 g28792 i0 36 1.40526315789474 89 57 70.3 0 379 113 886 974 XP_070726670.1 NACHT, LRR and PYD domains-containing protein 3-like isoform X2 [Pristiophorus japonicus] diamond 534 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
29062187 29062187 PRJNA1199330_P_NODE_32988_length_360_cov_2.174216_g32291_i0 PRJNA1199330 32988 360 2.174216 7.8271776 Engystomops pustulosus 76066 Chordata Chordata 45.8 0.0105   NR KAG8578345.1 76066 g32291 i0 29.2 0.8 96 59 77.5 3 360 82 263 352 KAG8578345.1 hypothetical protein GDO81_010459 [Engystomops pustulosus] diamond 288 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29175829 29175829 PRJNA1199330_P_NODE_118849_length_236_cov_2.957055_g118150_i0 PRJNA1199330 118849 236 2.957055 6.9786498 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.8 1.01e-9   NR XP_019631582.1 7741 g118150 i0 53.6 2.75847457627119 56 24 71.2 1 182 15 9 62 XP_019631582.1 PREDICTED: zinc metalloproteinase nas-14-like [Branchiostoma belcheri] diamond 651 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29175834 29175834 PRJNA1199330_P_NODE_72609_length_279_cov_2.446602_g71910_i0 PRJNA1199330 72609 279 2.446602 6.82601958 Metazoa 33208 Chordata Chordata 47 0.00115   NR ETE63361.1 8665 g71910 i0 37.7 2.76344086021505 53 33 57 0 276 118 33 85 ETE63361.1 Kelch-like protein 20, partial [Ophiophagus hannah] diamond 771 47.4 0.991561181434599 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
29396671 29396671 PRJNA1199330_P_NODE_70629_length_281_cov_1.923077_g69930_i0 PRJNA1199330 70629 281 1.923077 5.40384637 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 6.64e-24   NR XP_001506524.2 9258 g69930 i0 63.7 14.199288256227801 91 30 94 2 14 277 113 203 XP_001506524.2 calmodulin-1 [Ornithorhynchus anatinus] diamond 3990 101 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
29977679 29977679 PRJNA1199330_P_NODE_102411_length_251_cov_3.415730_g101712_i0 PRJNA1199330 102411 251 3.41573 8.5734823 Rhineura floridana 261503 Chordata Chordata 43.1 0.031   NR XP_061464887.1 261503 g101712 i0 45.7 0.418326693227092 35 19 41.8 0 122 18 1380 1414 XP_061464887.1 thrombospondin type-1 domain-containing protein 7B [Rhineura floridana] diamond 105 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Rhineuridae Rhineura Rhineura floridana
29996833 29996833 PRJNA1199330_P_NODE_9711_length_670_cov_4.403685_g9057_i0 PRJNA1199330 9711 670 4.403685 29.5046895 Chordata 7711 Chordata Chordata 52.8 4.34e-4   NR XP_010215796.1 94827 g9057 i0 29.9 1.93432835820896 67 44 30 2 209 9 412 475 XP_010215796.1 PREDICTED: kelch-like protein 23 [Tinamus guttatus] diamond 1296 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
30198719 30198719 PRJNA1199330_P_NODE_86912_length_266_cov_1.616580_g86213_i0 PRJNA1199330 86912 266 1.61658 4.3001028 Neotoma lepida 56216 Chordata Chordata 73.9 4.11e-13   NR OBS80384.1 56216 g86213 i0 56.1 46.8270676691729 57 25 64.3 0 264 94 295 351 OBS80384.1 hypothetical protein A6R68_21410 [Neotoma lepida] diamond 12456 74.3 0.994616419919246 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
30660160 30660160 PRJNA1199330_P_NODE_99133_length_254_cov_1.585635_g98434_i0 PRJNA1199330 99133 254 1.585635 4.0275129 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.2 0.00259   NR XP_066439908.1 57060 g98434 i0 31 6.93307086614173 84 53 99.2 2 3 254 29 107 XP_066439908.1 cadherin-16 [Eleutherodactylus coqui] diamond 1761 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
31526432 31526432 PRJNA1199330_P_NODE_92956_length_260_cov_2.272727_g92257_i0 PRJNA1199330 92956 260 2.272727 5.9090902 Rattus norvegicus 10116 Chordata Chordata 57.8 2.28e-7   NR NP_001388787.1 10116 g92257 i0 38.8 3.92307692307692 85 38 98.1 2 256 2 141 211 NP_001388787.1 similar to putative protein kinase [Rattus norvegicus] diamond 1020 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
32063940 32063940 PRJNA1199330_P_NODE_100798_length_252_cov_4.273743_g100099_i0 PRJNA1199330 100798 252 4.273743 10.76983236 Amazona aestiva 12930 Chordata Chordata 43.9 0.0166   NR KQK80754.1 12930 g100099 i0 36.4 0.785714285714286 66 37 72.6 2 6 188 1377 1442 KQK80754.1 von Willebrand factor D and EGF [Amazona aestiva] diamond 198 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Amazona Amazona aestiva
32317486 32317486 PRJNA1199330_P_NODE_108119_length_248_cov_0.891429_g107420_i0 PRJNA1199330 108119 248 0.891429 2.21074392 Mus caroli 10089 Chordata Chordata 58.2 3.62e-8   NR XP_029331409.1 10089 g107420 i0 86.1 0.435483870967742 36 5 43.5 0 109 216 1 36 XP_029331409.1 formin-like protein 20 [Mus caroli] diamond 108 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
32507273 32507273 PRJNA1199330_P_NODE_108879_length_247_cov_1.729885_g108180_i0 PRJNA1199330 108879 247 1.729885 4.27281595 Staurois parvus 386267 Chordata Chordata 67.4 2.36e-12   NR CAI9618505.1 386267 g108180 i0 41.2 1.03238866396761 85 45 99.6 2 247 2 10 92 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 255 67.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32683443 32683443 PRJNA1199330_P_NODE_114100_length_243_cov_2.582353_g113401_i0 PRJNA1199330 114100 243 2.582353 6.27511779 Aves 8782 Chordata Chordata 95.9 7.670000000000001e-21   NR XP_025967646.2 8790 g113401 i0 60.5 50.962962962963 81 25 98.8 2 4 243 67 141 XP_025967646.2 F-actin-monooxygenase MICAL1 [Dromaius novaehollandiae] diamond 12384 95.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Casuariiformes Dromaiidae Dromaius Dromaius novaehollandiae
32759200 32759200 PRJNA1199330_P_NODE_112740_length_244_cov_2.602339_g112041_i0 PRJNA1199330 112740 244 2.602339 6.34970716 Engystomops pustulosus 76066 Chordata Chordata 58.5 5.97e-9   NR KAG8534610.1 76066 g112041 i0 39.4 2.59426229508197 71 41 84.8 1 36 242 29 99 KAG8534610.1 hypothetical protein GDO81_019014, partial [Engystomops pustulosus] diamond 633 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;