RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1199330" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1199330 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11247468 11247468 PRJNA1199330_P_NODE_31309_length_370_cov_1.050505_g30613_i0 PRJNA1199330 31309 370 1.050505 3.8868685 root 1 Root_unresolved Root_unresolved 243 1.4e-75   NR AAX47270.1 271 g30613 i0 99.2 3.98918918918919 123 1 99.7 0 370 2 193 315 AAX47270.1 DNA polymerase large fragment, partial [Thermus aquaticus] diamond 1476 245 0.991836734693878 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
27072488 27072488 PRJNA1199330_P_NODE_123962_length_213_cov_5.521429_g123263_i0 PRJNA1199330 123962 213 5.521429 11.76064377 Fretibacterium sp. 2699746 Bacteria Bacteria 88.6 2.33e-21   NR MFC2593865.1 2699746 g123263 i0 97.9 0.676056338028169 48 1 67.6 0 144 1 1 48 MFC2593865.1 hypothetical protein [Fretibacterium sp.] diamond 144 88.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp.
29965143 29965143 PRJNA1199330_P_NODE_62071_length_289_cov_1.157407_g61372_i0 PRJNA1199330 62071 289 1.157407 3.34490623 Bacteria 2 Bacteria Bacteria 184 4.41e-52   NR 1TAQ_A 271 g61372 i0 98.9 5.91695501730104 95 1 98.6 0 287 3 40 134 1TAQ_A Chain A, TAQ DNA POLYMERASE [Thermus aquaticus] diamond 1710 184 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
30546496 30546496 PRJNA1199330_P_NODE_58633_length_292_cov_0.849315_g57934_i0 PRJNA1199330 58633 292 0.849315 2.4799998 Thermus sp. 2.9 1577051 Bacteria Bacteria 178 1.45e-50   NR WP_039457160.1 1577051 g57934 i0 93.8 0.996575342465753 97 6 99.7 0 1 291 3 99 WP_039457160.1 helix-turn-helix domain-containing protein [Thermus sp. 2.9] diamond 291 178 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. 2.9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;