contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA1198392" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3594194 | 3594194 | PRJNA1198392_P_NODE_13043_length_267_cov_1.587629_g12902_i0 | PRJNA1198392 | 13043 | 267 | 1.587629 | 4.23896943 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 72.4 | 1.39e-12 | NR | MBO5730434.1 | 166 | g12902 | i0 | 56.3 | 5.07865168539326 | 64 | 28 | 71.9 | 0 | 53 | 244 | 180 | 243 | MBO5730434.1 hypothetical protein [Treponema sp.] | diamond | 1356 | 72.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 23276920 | 23276920 | PRJNA1198392_P_NODE_5299_length_346_cov_1.238095_g5158_i0 | PRJNA1198392 | 5299 | 346 | 1.238095 | 4.2838087 | Treponema vincentii | 69710 | Bacteria | Bacteria | 188 | 9.05e-53 | NR | WP_385902931.1 | 69710 | g5158 | i0 | 78.1 | 2.1242774566474 | 114 | 25 | 98.8 | 0 | 3 | 344 | 281 | 394 | WP_385902931.1 transcription-repair coupling factor [Treponema vincentii] | diamond | 735 | 188 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 27704697 | 27704697 | PRJNA1198392_P_NODE_15704_length_251_cov_0.865169_g15563_i0 | PRJNA1198392 | 15704 | 251 | 0.865169 | 2.17157419 | Treponema vincentii | 69710 | Bacteria | Bacteria | 105 | 4.23e-24 | NR | WP_016519212.1 | 69710 | g15563 | i0 | 73.7 | 1.81673306772908 | 76 | 20 | 90.8 | 0 | 228 | 1 | 1 | 76 | WP_016519212.1 phosphoenolpyruvate--protein phosphotransferase [Treponema vincentii] | diamond | 456 | 105 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 27893670 | 27893670 | PRJNA1198392_P_NODE_15905_length_251_cov_0.865169_g15764_i0 | PRJNA1198392 | 15905 | 251 | 0.865169 | 2.17157419 | Treponema vincentii | 69710 | Bacteria | Bacteria | 141 | 1.01e-37 | NR | WP_006188422.1 | 69710 | g15764 | i0 | 88.6 | 1.86454183266932 | 79 | 9 | 94.4 | 0 | 3 | 239 | 127 | 205 | WP_006188422.1 alanine/glycine:cation symporter family protein [Treponema vincentii] | diamond | 468 | 141 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 28051642 | 28051642 | PRJNA1198392_P_NODE_9005_length_287_cov_1.331776_g8864_i0 | PRJNA1198392 | 9005 | 287 | 1.331776 | 3.82219712 | Treponema sp. OMZ 3 | 166 | Bacteria | Bacteria | 173 | 5.030000000000001e-50 | NR | WP_253675263.1 | 1659192 | g8864 | i0 | 90.5 | 1.98606271777003 | 95 | 9 | 99.3 | 0 | 286 | 2 | 137 | 231 | WP_253675263.1 CobW family GTP-binding protein [Treponema sp. OMZ 305] | diamond | 570 | 173 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 305 | ||
| 31114949 | 31114949 | PRJNA1198392_P_NODE_17455_length_248_cov_0.880000_g17314_i0 | PRJNA1198392 | 17455 | 248 | 0.88 | 2.1824 | Treponema vincentii | 69710 | Bacteria | Bacteria | 148 | 4.61e-41 | NR | WP_006187939.1 | 69710 | g17314 | i0 | 91.4 | 0.979838709677419 | 81 | 7 | 98 | 0 | 245 | 3 | 1 | 81 | WP_006187939.1 glycine/sarcosine/betaine reductase complex component C subunit alpha [Treponema vincentii] | diamond | 243 | 148 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 31558107 | 31558107 | PRJNA1198392_P_NODE_6196_length_325_cov_1.384921_g6055_i0 | PRJNA1198392 | 6196 | 325 | 1.384921 | 4.50099325 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 222 | 6.29e-71 | NR | MFA6935580.1 | 2791017 | g6055 | i0 | 99.1 | 0.987692307692308 | 107 | 1 | 98.8 | 0 | 323 | 3 | 124 | 230 | MFA6935580.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 321 | 222 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 32412202 | 32412202 | PRJNA1198392_P_NODE_12299_length_271_cov_1.247475_g12158_i0 | PRJNA1198392 | 12299 | 271 | 1.247475 | 3.38065725 | Treponema sp. | 166 | Bacteria | Bacteria | 153 | 8.6e-45 | NR | MFC2602358.1 | 166 | g12158 | i0 | 88.8 | 0.985239852398524 | 89 | 9 | 97.4 | 1 | 1 | 264 | 117 | 205 | MFC2602358.1 30S ribosomal protein S3 [Treponema sp.] | diamond | 267 | 153 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 32507268 | 32507268 | PRJNA1198392_P_NODE_6679_length_314_cov_1.278008_g6538_i0 | PRJNA1198392 | 6679 | 314 | 1.278008 | 4.01294512 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 201 | 4.3200000000000005e-58 | NR | MFA6935539.1 | 2791017 | g6538 | i0 | 97.1 | 0.974522292993631 | 102 | 3 | 97.5 | 0 | 312 | 7 | 660 | 761 | MFA6935539.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 306 | 201 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 32664539 | 32664539 | PRJNA1198392_P_NODE_20620_length_242_cov_0.911243_g20479_i0 | PRJNA1198392 | 20620 | 242 | 0.911243 | 2.20520806 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 90.1 | 1.52e-21 | NR | MFA6935545.1 | 2791017 | g20479 | i0 | 87 | 0.669421487603306 | 54 | 7 | 66.9 | 0 | 240 | 79 | 33 | 86 | MFA6935545.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 162 | 90.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;