RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1198392" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1198392 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31905801 31905801 PRJNA1198392_P_NODE_15617_length_251_cov_1.730337_g15476_i0 PRJNA1198392 15617 251 1.730337 4.34314587 Acrasis kona 1008807 Heterolobosea other_Eukaryota 97.4 5.3e-23   NR KAL0491095.1 1008807 g15476 i0 75 0.717131474103586 60 15 71.7 0 1 180 129 188 KAL0491095.1 Ras-related protein Rab [Acrasis kona] diamond 180 97.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32159116 32159116 PRJNA1198392_P_NODE_12218_length_271_cov_1.555556_g12077_i0 PRJNA1198392 12218 271 1.555556 4.21555676 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 59.7 5.81e-8   NR XP_002674608.1 5762 g12077 i0 42.5 6.7970479704797 80 43 88.6 1 240 1 245 321 XP_002674608.1 uncharacterized protein NAEGRDRAFT_70209 [Naegleria gruberi] diamond 1842 60.1 0.993344425956739 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;