RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1198392" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1198392 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26692632 26692632 PRJNA1198392_P_NODE_21941_length_217_cov_3.784722_g21800_i0 PRJNA1198392 21941 217 3.784722 8.21284674 Helicobacter pylori 210 Bacteria Bacteria 39.7 0.0378   NR WP_316480680.1 210 g21800 i0 88.9 0.248847926267281 18 2 24.9 0 1 54 7 24 WP_316480680.1 hypothetical protein [Helicobacter pylori] diamond 54 39.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29598496 29598496 PRJNA1198392_P_NODE_19230_length_245_cov_0.895349_g19089_i0 PRJNA1198392 19230 245 0.895349 2.19360505 Helicobacter pylori 210 Bacteria Bacteria 58.2 2.45e-9   NR GAA8692375.1 210 g19089 i0 49.1 0.673469387755102 55 13 67.3 1 232 68 2 41 GAA8692375.1 hypothetical protein Kyoto145A_2350 [Helicobacter pylori] diamond 165 58.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30641087 30641087 PRJNA1198392_P_NODE_9133_length_286_cov_1.610329_g8992_i0 PRJNA1198392 9133 286 1.610329 4.60554094 Helicobacter pylori 210 Bacteria Bacteria 72.4 6.32e-14   NR GAA6955717.1 210 g8992 i0 44.9 1.02797202797203 98 19 67.1 2 1 192 6 102 GAA6955717.1 hypothetical protein Kyoto211A_1670 [Helicobacter pylori] diamond 294 72.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;