RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1198392" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA1198392 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7421633 7421633 PRJNA1198392_P_NODE_10266_length_281_cov_1.480769_g10125_i0 PRJNA1198392 10266 281 1.480769 4.16096089 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 167 2.42e-46   NR WP_299080220.1 1678694 g10125 i0 96.7 0.97153024911032 91 3 97.2 0 281 9 601 691 WP_299080220.1 heavy metal translocating P-type ATPase [uncultured Fretibacterium sp.] diamond 273 167 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
10528437 10528437 PRJNA1198392_P_NODE_20589_length_242_cov_0.911243_g20448_i0 PRJNA1198392 20589 242 0.911243 2.20520806 Deinobacterium chartae 521158 Bacteria Bacteria 117 3.19e-32   NR MBB6100160.1 521158 g20448 i0 96.8 0.768595041322314 62 2 76.9 0 56 241 1 62 MBB6100160.1 translation initiation factor IF-1 [Deinobacterium chartae] diamond 186 117 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinobacterium Deinobacterium chartae
26901772 26901772 PRJNA1198392_P_NODE_11281_length_276_cov_1.517241_g11140_i0 PRJNA1198392 11281 276 1.517241 4.18758516 Deinococcus 1298 Bacteria Bacteria 172 7.829999999999999e-52   NR WP_224606075.1 1656887 g11140 i0 88.9 1.96739130434783 90 10 97.8 0 3 272 157 246 WP_224606075.1 methylenetetrahydrofolate reductase [Deinococcus multiflagellatus] diamond 543 172 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus multiflagellatus
28114666 28114666 PRJNA1198392_P_NODE_8365_length_290_cov_1.105991_g8224_i0 PRJNA1198392 8365 290 1.105991 3.2073739 Deinococcus xinjiangensis 457454 Bacteria Bacteria 197 1.14e-59   NR WP_353544288.1 457454 g8224 i0 97.9 0.993103448275862 96 2 99.3 0 1 288 115 210 WP_353544288.1 alpha/beta hydrolase family protein [Deinococcus xinjiangensis] diamond 288 197 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
28683308 28683308 PRJNA1198392_P_NODE_14807_length_257_cov_1.255435_g14666_i0 PRJNA1198392 14807 257 1.255435 3.22646795 Meiothermus 65551 Bacteria Bacteria 68.2 1.21e-11   NR WP_241768739.1 65551 g14666 i0 78.4 0.431906614785992 37 8 43.2 0 144 254 1 37 WP_241768739.1 MULTISPECIES: DUF4433 domain-containing protein [Meiothermus] diamond 111 68.2 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus  
31368341 31368341 PRJNA1198392_P_NODE_14816_length_257_cov_1.255435_g14675_i0 PRJNA1198392 14816 257 1.255435 3.22646795 Thermus oshimai 56957 Bacteria Bacteria 105 9.99e-28   NR GAA6741988.1 56957 g14675 i0 79.7 0.747081712062257 64 13 74.7 0 42 233 19 82 GAA6741988.1 hypothetical protein Thermus77359_21750 [Thermus oshimai] diamond 192 105 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;