RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1197996" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1197996 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26851232 26851232 PRJNA1197996_S_NODE_1961_length_562_cov_1.541922_g1911_i0 PRJNA1197996 1961 562 1.541922 8.66560164 Amphimedon queenslandica 400682 Porifera other_Eukaryota 75.9 2.18e-14   NR XP_019864016.1 400682 g1911 i0 58.2 0.875444839857651 55 23 29.4 0 25 189 31 85 XP_019864016.1 PREDICTED: dihydropyrimidinase-like [Amphimedon queenslandica] diamond 492 75.9 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
28525418 28525418 PRJNA1197996_S_NODE_15047_length_294_cov_1.045249_g14993_i0 PRJNA1197996 15047 294 1.045249 3.07303206 Oopsacas minuta 111878 Porifera other_Eukaryota 62 9.26e-9   NR KAI6647346.1 111878 g14993 i0 54.7 1.08163265306122 53 23 53.1 1 293 138 270 322 KAI6647346.1 hypothetical protein LOD99_12342 [Oopsacas minuta] diamond 318 62 1 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Leucopsacidae Oopsacas Oopsacas minuta
29585811 29585811 PRJNA1197996_S_NODE_14970_length_294_cov_1.737557_g14916_i0 PRJNA1197996 14970 294 1.737557 5.10841758 Metazoa 33208 Porifera other_Eukaryota 58.9 1.35e-7   NR XP_065890717.1 196820 g14916 i0 64.9 1.8469387755102 37 13 37.8 0 28 138 378 414 XP_065890717.1 aminoacylase-1-like [Dysidea avara] diamond 543 58.9 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;