RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1197996" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1197996 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27167185 27167185 PRJNA1197996_S_NODE_4482_length_429_cov_4.269663_g4428_i0 PRJNA1197996 4482 429 4.269663 18.31685427 Prymnesium sp. 2812485 Haptophyta other_Eukaryota 69.7 1.05e-10   NR KAL3923676.1 2812485 g4428 i0 58.6 0.405594405594406 58 24 40.6 0 1 174 500 557 KAL3923676.1 MAG: hypothetical protein SGPRY_004146 [Prymnesium sp.] diamond 174 69.7 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium sp.
29049482 29049482 PRJNA1197996_S_NODE_14548_length_297_cov_1.214286_g14494_i0 PRJNA1197996 14548 297 1.214286 3.60642942 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 1.5e-4   NR KAL1525985.1 97485 g14494 i0 54.8 1.23232323232323 42 19 42.4 0 166 41 216 257 KAL1525985.1 hypothetical protein AB1Y20_020810 [Prymnesium parvum] diamond 366 50.4 0.994047619047619 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;