RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1197996" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1197996 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28114655 28114655 PRJNA1197996_S_NODE_21145_length_261_cov_1.851064_g21091_i0 PRJNA1197996 21145 261 1.851064 4.83127704 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 45.4 0.00484   NR XP_004259952.1 370355 g21091 i0 40 0.689655172413793 60 35 69 1 50 229 5 63 XP_004259952.1 protein disulfide isomerase, putative [Entamoeba invadens IP1] diamond 180 45.4 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
29144382 29144382 PRJNA1197996_S_NODE_5709_length_398_cov_2.132308_g5655_i0 PRJNA1197996 5709 398 2.132308 8.48658584 root 1 Root_unresolved Root_unresolved 95.9 5.25e-20   NR PRP75618.1 1890364 g5655 i0 57 2.93969849246231 79 33 58.8 1 1 234 565 643 PRP75618.1 hypothetical protein PROFUN_07984 [Planoprotostelium fungivorum] diamond 1170 95.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30167134 30167134 PRJNA1197996_S_NODE_19612_length_268_cov_1.974359_g19558_i0 PRJNA1197996 19612 268 1.974359 5.29128212 Cavenderia fasciculata 261658 Evosea other_Eukaryota 68.6 4.23e-12   NR XP_004362647.1 261658 g19558 i0 56 1.07462686567164 50 22 56 0 268 119 114 163 XP_004362647.1 eukaryotic translation initiation factor 5A [Cavenderia fasciculata] diamond 288 68.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;