RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1196438" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1196438 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4149925 4149925 PRJNA1196438_P_NODE_35044_length_297_cov_2.558036_g34618_i0 PRJNA1196438 35044 297 2.558036 7.59736692 Chlamydiia bacterium 2052156 Bacteria Bacteria 62.4 4.09e-9   NR MCH9614076.1 2052156 g34618 i0 46.9 1.29292929292929 64 32 62.6 1 1 186 149 212 MCH9614076.1 Ribonuclease BN [Chlamydiia bacterium] diamond 384 62.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
7976334 7976334 PRJNA1196438_P_NODE_27607_length_301_cov_4.179825_g27181_i0 PRJNA1196438 27607 301 4.179825 12.58127325 Chlamydiales bacterium 2047757 Bacteria Bacteria 95.5 2.07e-20   NR MBN9378883.1 2047757 g27181 i0 73.5 1.87375415282392 68 17 67.8 1 299 96 107 173 MBN9378883.1 NADH-quinone oxidoreductase subunit L [Chlamydiales bacterium] diamond 564 95.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27293750 27293750 PRJNA1196438_P_NODE_9303_length_345_cov_1.716912_g8879_i0 PRJNA1196438 9303 345 1.716912 5.9233464 Waddlia chondrophila 71667 Bacteria Bacteria 43.9 0.0425   NR WP_013182342.1 71667 g8879 i0 66.7 0.234782608695652 27 5 20 1 313 245 131 157 WP_013182342.1 MFS transporter [Waddlia chondrophila] diamond 81 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
27628736 27628736 PRJNA1196438_P_NODE_70404_length_247_cov_0.896552_g69977_i0 PRJNA1196438 70404 247 0.896552 2.21448344 Simkania 34093 Bacteria Bacteria 111 3.28e-29   NR MBS3903901.1 34094 g69977 i0 65.9 4.96761133603239 82 28 99.6 0 246 1 22 103 MBS3903901.1 YjdF family protein [Simkania sp.] diamond 1227 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
28114611 28114611 PRJNA1196438_P_NODE_4765_length_453_cov_2.731579_g4347_i0 PRJNA1196438 4765 453 2.731579 12.37405287 Chlamydiota bacterium 2081524 Bacteria Bacteria 46.6 0.0128   NR MCH9632675.1 2081524 g4347 i0 54.5 0.417218543046358 33 15 21.9 0 101 3 8 40 MCH9632675.1 hypothetical protein [Chlamydiota bacterium] diamond 189 46.6 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32538821 32538821 PRJNA1196438_P_NODE_39039_length_290_cov_2.594470_g38612_i0 PRJNA1196438 39039 290 2.59447 7.523963 Chlamydiota bacterium 2081524 Bacteria Bacteria 138 3.94e-37   NR MCH9632073.1 2081524 g38612 i0 72.9 0.993103448275862 96 26 99.3 0 1 288 1 96 MCH9632073.1 Peptidoglycan glycosyltransferase MrdB [Chlamydiota bacterium] diamond 288 138 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;